ggKbase home page

SCNpilot_cont_300_bf_scaffold_851_curated

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_851_curated_1
unknown

Not on your lists

2..1135
DNA (1134bp) protein (378aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_851_curated_2
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2144..3439
DNA (1296bp) protein (432aa)
Sugar transferase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VFT4_SPHWW
sugar transferase
Sugar transferase {ECO:0000313|EMBL:ABQ71150.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_cont_300_bf_scaffold_851_curated_3
unknown

Not on your lists

3524..4657
DNA (1134bp) protein (378aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_851_curated_4
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4850..5926
DNA (1077bp) protein (359aa)
GDP-mannose 4,6-dehydratase; K01711 GDPmannose 4,6-dehydratase [EC:4.2.1.47]
GDP-mannose 4,6-dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; EC=4.2.1.47 {ECO:0000256|HAMAP-Rule:MF_00955};; GDP-D-mannose dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
GDP-mannose 4,6-dehydratase n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QLI0_AZOSU
SCNpilot_cont_300_bf_scaffold_851_curated_5
BJP_08E140C01_Dechloromonas_61_78, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6149..7441
DNA (1293bp) protein (431aa)
Polysaccharide biosynthesis protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q125A3_POLSJ
polysaccharide biosynthesis protein
Tax=BJP_08E140C01_Dechloromonas_61_78
SCNpilot_cont_300_bf_scaffold_851_curated_6
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7501..8238
DNA (738bp) protein (246aa)
Methyltransferase FkbM n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q125A4_POLSJ
methyltransferase FkbM
Methyltransferase FkbM {ECO:0000313|EMBL:ABE45888.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
SCNpilot_cont_300_bf_scaffold_851_curated_7
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8231..9274
DNA (1044bp) protein (348aa)
Glycosyl transferase, family 2 n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q125A6_POLSJ
glycosyl transferase family protein
Glycosyl transferase, family 2 {ECO:0000313|EMBL:ABE45886.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
SCNpilot_cont_300_bf_scaffold_851_curated_8
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9325..10263
DNA (939bp) protein (313aa)
dTDP-glucose 4,6-dehydratase n=1 Tax=Methylovorus sp. (strain MP688) RepID=E4QNY2_METS6
gmd; dTDP-glucose 4,6-dehydratase
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_cont_300_bf_scaffold_851_curated_9
BJP_08E140C01_Dechloromonas_61_78, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10260..11498
DNA (1239bp) protein (413aa)
C-methyltransferase n=1 Tax=Methylovorus sp. (strain MP688) RepID=E4QNY1_METS6
c-methyltransferase
Tax=BJP_08E140C01_Dechloromonas_61_78
SCNpilot_cont_300_bf_scaffold_851_curated_10
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11614..12531
DNA (918bp) protein (306aa)
alpha-L-Rha alpha-1,3-L-rhamnosyltransferase; K12997 rhamnosyltransferase [EC:2.4.1.-]
Glycosyl transferase n=1 Tax=Acidovorax sp. CF316 RepID=J1EN09_9BURK
Glycosyl transferase {ECO:0000313|EMBL:EJE53641.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
SCNpilot_cont_300_bf_scaffold_851_curated_11
Endozoicomonas elysicola, Endozoicomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12531..13691
DNA (1161bp) protein (387aa)
group 1 glycosyl transferase (EC:2.4.1.-)
hypothetical protein n=1 Tax=Endozoicomonas elysicola RepID=UPI000381746E
Glycosyl transferase {ECO:0000313|EMBL:KEI70760.1}; TaxID=305900 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Hahellaceae; Endozoicomonas.;" source="Endozoicomonas elysicola.;"
SCNpilot_cont_300_bf_scaffold_851_curated_12
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13802..15271)
DNA (1470bp) protein (490aa)
Polysaccharide biosynthesis family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X1L9_9SPHN
DNA, contig: SP624 {ECO:0000313|EMBL:GAN13736.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
polysaccharide biosynthesis protein
SCNpilot_cont_300_bf_scaffold_851_curated_13
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15354..18119)
DNA (2766bp) protein (922aa)
DNA polymerase I; K02335 DNA polymerase I [EC:2.7.7.7]
DNA polymerase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B300F1
DNA polymerase {ECO:0000313|EMBL:AJP73637.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_cont_300_bf_scaffold_851_curated_14
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18270..19427)
DNA (1158bp) protein (386aa)
Beta-lactamase {ECO:0000256|SAAS:SAAS00063099}; EC=3.5.2.6 {ECO:0000256|SAAS:SAAS00063099};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
beta-lactamase; K01467 beta-lactamase [EC:3.5.2.6]
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00035D02FB
SCNpilot_cont_300_bf_scaffold_851_curated_15
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19528..21150)
DNA (1623bp) protein (541aa)
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
L-aspartate oxidase n=1 Tax=Sphingomonas melonis RepID=UPI0003671769
L-aspartate oxidase
SCNpilot_cont_300_bf_scaffold_851_curated_16
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21713..22093
DNA (381bp) protein (127aa)
thiamine-monophosphate kinase (EC:2.7.4.16); K00946 thiamine-monophosphate kinase [EC:2.7.4.16]
thiamine-monophosphate kinase n=1 Tax=Sphingomonas elodea RepID=UPI00026312F4
Thiamine-monophosphate kinase {ECO:0000313|EMBL:KHA63151.1}; Flags: Fragment;; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
SCNpilot_cont_300_bf_scaffold_851_curated_17
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22338..24518
DNA (2181bp) protein (727aa)
K(+)-insensitive pyrophosphate-energized proton pump {ECO:0000256|HAMAP-Rule:MF_01129}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_01129};; Membrane-bound proton-translocating pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; Pyrophosphate-energized inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hppA; membrane-bound proton-translocating pyrophosphatase (EC:3.6.1.1); K15987 K(+)-stimulated pyrophosphate-energized sodium pump [EC:3.6.1.1]
pyrophosphatase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000381F4B3
SCNpilot_cont_300_bf_scaffold_851_curated_18
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24628..26565
DNA (1938bp) protein (646aa)
hypothetical protein n=2 Tax=Sphingomonas melonis RepID=UPI00036A78E5
Sphingomonas taxi strain 30a NODE_68, whole genome shotgun sequence {ECO:0000313|EMBL:KIU27728.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
putative peptidase
SCNpilot_cont_300_bf_scaffold_851_curated_19
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26690..26911
DNA (222bp) protein (74aa)
translation initiation factor IF-1 n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036238F2
infA; translation initiation factor IF-1; K02518 translation initiation factor IF-1
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
SCNpilot_cont_300_bf_scaffold_851_curated_20
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26930..27511
DNA (582bp) protein (194aa)
septum formation protein Maf n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CA610
Maf-like protein MC45_09665 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
maf protein; K06287 septum formation protein
SCNpilot_cont_300_bf_scaffold_851_curated_21
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27504..28424
DNA (921bp) protein (307aa)
ribonuclease n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B7234F
Uncharacterized protein {ECO:0000313|EMBL:EZP54610.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_851_curated_22
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28421..28594
DNA (174bp) protein (58aa)
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WU85_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAM02501.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
hypothetical protein; K09862 hypothetical protein
SCNpilot_cont_300_bf_scaffold_851_curated_23
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28752..30527)
DNA (1776bp) protein (592aa)
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V6D3_SPHWW
hypothetical protein
Tetratricopeptide TPR_2 repeat protein {ECO:0000313|EMBL:ABQ67849.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_cont_300_bf_scaffold_851_curated_24
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30628..31341)
DNA (714bp) protein (238aa)
hypothetical protein n=1 Tax=Caulobacter sp. JGI 0001013-O16 RepID=UPI00036FA546
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ABF52414.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_cont_300_bf_scaffold_851_curated_25
Collimonas arenae, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31391..33232
DNA (1842bp) protein (614aa)
Putative uncharacterized protein n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L7R6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AIY39412.1}; TaxID=279058 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas arenae.;"
PDZ/DHR/GLGF domain-containing protein
SCNpilot_cont_300_bf_scaffold_851_curated_26
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33304..34032)
DNA (729bp) protein (243aa)
rRNA methyltransferase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002488F3B
Sphingomonas taxi strain 30a NODE_34, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26167.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
tRNA/rRNA methyltransferase
SCNpilot_cont_300_bf_scaffold_851_curated_27
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34029..34490)
DNA (462bp) protein (154aa)
NrdR family transcriptional regulator n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B7AD23
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
nrdR; transcriptional repressor NrdR; K07738 transcriptional repressor NrdR
SCNpilot_cont_300_bf_scaffold_851_curated_28
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34629..34805)
DNA (177bp) protein (59aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037A9E0E
Uncharacterized protein {ECO:0000313|EMBL:EZP50299.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
SCNpilot_cont_300_bf_scaffold_851_curated_29
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34816..36123)
DNA (1308bp) protein (436aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
glyA; serine hydroxymethyltransferase (EC:2.1.2.1); K00600 glycine hydroxymethyltransferase [EC:2.1.2.1]
serine hydroxymethyltransferase n=1 Tax=Sphingomonas melonis RepID=UPI00038062BF
SCNpilot_cont_300_bf_scaffold_851_curated_30
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36139..36582)
DNA (444bp) protein (148aa)
RpiB/LacA/LacB family sugar-phosphate isomerase; K01808 ribose 5-phosphate isomerase B [EC:5.3.1.6]
Ribose 5-phosphate isomerase B n=1 Tax=Sphingomonas sp. S17 RepID=F3WU55_9SPHN
RpiB protein {ECO:0000313|EMBL:GAN13488.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
Displaying items 1-30 of 43 in total

View Taxonomy