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SCNpilot_cont_300_bf_scaffold_582_curated_7

Organism: scnpilot_dereplicated_Sphingomonas_3

near complete RP 46 / 55 MC: 5 BSCG 45 / 51 MC: 4 ASCG 11 / 38
Location: comp(6657..6956)

Top 3 Functional Annotations

Value Algorithm Source
Putative conjugal transfer TrbD transmembrane protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VXD7_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 84.8
  • Coverage: 99.0
  • Bit_score: 172
  • Evalue 1.90e-40
Putative conjugal transfer TrbD transmembrane protein {ECO:0000313|EMBL:EJU12106.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 84.8
  • Coverage: 99.0
  • Bit_score: 172
  • Evalue 2.60e-40
putative conjugal transfer TrbD transmembrane protein; K03198 type IV secretion system protein VirB3 similarity KEGG
DB: KEGG
  • Identity: 94.1
  • Coverage: 85.0
  • Bit_score: 165
  • Evalue 1.20e-38

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Taxonomy

Sphingomonas sp. LH128 → Sphingomonas → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 300
ATGGCGGGGGCCAGCTTCATCGCGCCAAATGGCTTTGTCATTGGCCATGTGGAGGGATTTGAAGTCCCGCTGCATCGCGCGCTGACCGAGCCGATCCTACTGGGCGGCGCGCCGCGCGGGATCGCCATCCTCAACGGCACGCTCGCCGCCGCGATGGGGCTGGGCCTCCAGCAATGGATCGCCGGACTGCTGCTCTGGCTTGCCGGACACAGCCTCGCCGTGTTCGCGGCCAAGCGCGATCCCGATTTCGCGCCCGTCCTCGCGCGCCACCTCCGGCAGAAGGTCTGTCTCTCATGCTGA
PROTEIN sequence
Length: 100
MAGASFIAPNGFVIGHVEGFEVPLHRALTEPILLGGAPRGIAILNGTLAAAMGLGLQQWIAGLLLWLAGHSLAVFAAKRDPDFAPVLARHLRQKVCLSC*