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SCNpilot_cont_300_bf_scaffold_582_curated

Search features with annotation key words

Displaying items 1-30 of 97 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_582_curated_1
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..210)
DNA (210bp) protein (70aa)
Conjugation TrbI family protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F0R2_SPHCR
conjugation TrbI family protein; K03195 type IV secretion system protein VirB10
Conjugation TrbI family protein {ECO:0000313|EMBL:AEG50384.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_cont_300_bf_scaffold_582_curated_2
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(207..1202)
DNA (996bp) protein (332aa)
P-type conjugative transfer protein TrbG n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F0R1_SPHCR
P-type conjugative transfer protein TrbG; K03204 type IV secretion system protein VirB9
P-type conjugative transfer protein TrbG {ECO:0000313|EMBL:AEG50383.1}; Flags: Precursor;; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_cont_300_bf_scaffold_582_curated_3
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1199..2071)
DNA (873bp) protein (291aa)
Conjugal transfer protein TrbF n=1 Tax=Sphingomonas sp. LH128 RepID=J8VSL3_9SPHN
Conjugal transfer protein TrbF {ECO:0000313|EMBL:EJU13615.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5
SCNpilot_cont_300_bf_scaffold_582_curated_4
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2078..3439)
DNA (1362bp) protein (454aa)
Conjugal transfer protein TrbL n=1 Tax=Sphingobium lactosutens DS20 RepID=T0IS19_9SPHN
Conjugal transfer protein TrbL {ECO:0000313|EMBL:EQB12469.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
P-type conjugative transfer protein TrbL; K07344 type IV secretion system protein TrbL
SCNpilot_cont_300_bf_scaffold_582_curated_5
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3452..4198)
DNA (747bp) protein (249aa)
Conjugal transfer protein TrbJ n=1 Tax=Sphingomonas sp. LH128 RepID=J8VZZ5_9SPHN
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:EJU13613.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
P-type conjugative transfer protein TrbJ
SCNpilot_cont_300_bf_scaffold_582_curated_6
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4195..6663)
DNA (2469bp) protein (823aa)
CagE, TrbE, VirB component of type IV transporter system, conserved region n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F0Q7_SPHCR
CagE, TrbE, VirB component of type IV transporter system, conserved region {ECO:0000313|EMBL:AEG50379.1}; Flags: Precursor;; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
CagE TrbE VirB component of type IV transporter system conserved region; K03199 type IV secretion system protein VirB4
SCNpilot_cont_300_bf_scaffold_582_curated_7
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6657..6956)
DNA (300bp) protein (100aa)
Putative conjugal transfer TrbD transmembrane protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VXD7_9SPHN
Putative conjugal transfer TrbD transmembrane protein {ECO:0000313|EMBL:EJU12106.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
putative conjugal transfer TrbD transmembrane protein; K03198 type IV secretion system protein VirB3
SCNpilot_cont_300_bf_scaffold_582_curated_8
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6956..7294)
DNA (339bp) protein (113aa)
Conjugal transfer protein TrbC n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F0Q5_SPHCR
conjugal transfer protein Trbc; K03197 type IV secretion system protein VirB2
Conjugal transfer protein TrbC {ECO:0000313|EMBL:AEG50377.1}; Flags: Precursor;; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_cont_300_bf_scaffold_582_curated_9
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7300..8292)
DNA (993bp) protein (331aa)
P-type conjugative transfer ATPase TrbB n=1 Tax=Sphingomonas sp. LH128 RepID=J8VVQ6_9SPHN
P-type conjugative transfer ATPase TrbB {ECO:0000313|EMBL:EJU12108.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
P-type conjugative transfer ATPase TrbB; K03196 type IV secretion system protein VirB11
SCNpilot_cont_300_bf_scaffold_582_curated_10
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8289..8693)
DNA (405bp) protein (135aa)
CopG/DNA-binding domain-containing protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F0Q3_SPHCR
CopG/DNA-binding domain-containing protein
CopG/DNA-binding domain-containing protein {ECO:0000313|EMBL:AEG50375.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_cont_300_bf_scaffold_582_curated_11
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8708..10756)
DNA (2049bp) protein (683aa)
Conjugal transfer coupling protein TraG n=1 Tax=Sphingomonas sp. LH128 RepID=J8VNB8_9SPHN
Conjugal transfer coupling protein TraG {ECO:0000313|EMBL:EJU12110.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
TRAG family protein; K03205 type IV secretion system protein VirD4
SCNpilot_cont_300_bf_scaffold_582_curated_12
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10902..11357)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VXE1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU12111.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_582_curated_13
unknown

Not on your lists

comp(11734..11940)
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_582_curated_14
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

12103..12324
DNA (222bp) protein (74aa)
hypothetical protein id=14625843 bin=bin7_NC10_sister species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=CSP1_6_Rokubacteria
SCNpilot_cont_300_bf_scaffold_582_curated_15
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12453..12809
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HVP7_PARL1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS63980.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_300_bf_scaffold_582_curated_16
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12806..13393
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HVP8_PARL1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS63981.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_300_bf_scaffold_582_curated_17
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13886..16963
DNA (3078bp) protein (1026aa)
Bll8094 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89BQ4_BRADU
Bll8094 protein {ECO:0000313|EMBL:BAC53359.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
hypothetical protein rbh
SCNpilot_cont_300_bf_scaffold_582_curated_18
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17219..17872
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GW22_SPHAL
Uncharacterized protein {ECO:0000313|EMBL:KFD25686.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_582_curated_19
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17869..19797
DNA (1929bp) protein (643aa)
Uncharacterized protein n=1 Tax=Roseovarius sp. TM1035 RepID=A6E5K9_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KFD25685.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_582_curated_20
Roseovarius sp. TM1035, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19823..21739
DNA (1917bp) protein (639aa)
Uncharacterized protein n=1 Tax=Roseovarius sp. TM1035 RepID=A6E5L1_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EDM30122.1}; TaxID=391613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius sp. TM1035.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_582_curated_21
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21980..23956)
DNA (1977bp) protein (659aa)
Putative uncharacterized protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F0Q1_SPHCR
Uncharacterized protein {ECO:0000313|EMBL:AEG50373.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_582_curated_22
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24272..24406)
DNA (135bp) protein (45aa)
Putative uncharacterized protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F0Q0_SPHCR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG50372.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_cont_300_bf_scaffold_582_curated_23
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24617..25297)
DNA (681bp) protein (227aa)
Lytic transglycosylase catalytic subunit n=1 Tax=Sphingomonas sp. LH128 RepID=J8SGZ5_9SPHN
Lytic transglycosylase catalytic subunit {ECO:0000313|EMBL:EJU12119.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
lytic transglycosylase catalytic subunit
SCNpilot_cont_300_bf_scaffold_582_curated_24
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25285..25872)
DNA (588bp) protein (196aa)
Peptidase S26, conserved region n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F0P8_SPHCR
peptidase S26 conserved region
Peptidase S26, conserved region {ECO:0000313|EMBL:AEG50370.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_cont_300_bf_scaffold_582_curated_25
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25865..26104)
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VXF1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU12121.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_582_curated_26
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26294..26632)
DNA (339bp) protein (113aa)
Putative uncharacterized protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F0P6_SPHCR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG50368.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_cont_300_bf_scaffold_582_curated_27
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27289..29109)
DNA (1821bp) protein (607aa)
ParB domain protein nuclease n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F0P3_SPHCR
ParB domain-containing protein nuclease; K03497 chromosome partitioning protein, ParB family
ParB domain protein nuclease {ECO:0000313|EMBL:AEG50365.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_cont_300_bf_scaffold_582_curated_28
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29208..29624)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VND2_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EJU12125.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
SCNpilot_cont_300_bf_scaffold_582_curated_29
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29621..30571)
DNA (951bp) protein (317aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VXF5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU12126.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_582_curated_30
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30981..31793)
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VH51_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU12127.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
hypothetical protein
Displaying items 1-30 of 97 in total

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