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SCNpilot_cont_300_bf_scaffold_168_curated

Search features with annotation key words

Displaying items 1-30 of 248 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_168_curated_1
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

comp(437..2332)
DNA (1896bp) protein (632aa)
Uncharacterized protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KQM4_HALH1
hypothetical protein
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
SCNpilot_cont_300_bf_scaffold_168_curated_2
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2456..3184
DNA (729bp) protein (243aa)
Uncharacterized protein n=2 Tax=Alphaproteobacteria RepID=K9CP32_SPHYA
GntR family transcriptional regulator {ECO:0000313|EMBL:KGB56694.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
GntR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_168_curated_3
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3181..3885)
DNA (705bp) protein (235aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036E6736
GntR family transcriptional regulator
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCNpilot_cont_300_bf_scaffold_168_curated_4
Asticcacaulis sp. AC466, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4054..5199
DNA (1146bp) protein (382aa)
glycoside hydrolase family protein; K15532 unsaturated rhamnogalacturonyl hydrolase [EC:3.2.1.172]
Glycosyl hydrolase family 88 n=1 Tax=Asticcacaulis sp. AC466 RepID=V4P662_9CAUL
Glycosyl hydrolase family 88 {ECO:0000313|EMBL:ESQ82594.1}; TaxID=1282362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC466.;"
SCNpilot_cont_300_bf_scaffold_168_curated_5
Alteromonas australica, Alteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5196..6734
DNA (1539bp) protein (513aa)
Major facilitator transporter n=1 Tax=Cellvibrio sp. BR RepID=I3I9K8_9GAMM
Major facilitator transporter {ECO:0000313|EMBL:AIF99896.1}; TaxID=589873 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alteromonas.;" source="Alteromonas australica.;"
uxuT; oligogalacturonide transporter
SCNpilot_cont_300_bf_scaffold_168_curated_6
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(6731..7615)
DNA (885bp) protein (295aa)
fructokinase (EC:2.7.1.4); K00847 fructokinase [EC:2.7.1.4]
Fructokinase {ECO:0000313|EMBL:AEN72058.1}; EC=2.7.1.4 {ECO:0000313|EMBL:AEN72058.1};; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus SG0.5JP17-172.;"
Fructokinase n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SE66_RHOMR
SCNpilot_cont_300_bf_scaffold_168_curated_7
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

Not on your lists

comp(7618..9390)
DNA (1773bp) protein (591aa)
Uncharacterized protein id=3416279 bin=GWF2_Lentisphaerae_49_21 species=unknown genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
hypothetical protein
Tax=GWF2_Lentisphaerae_49_21_curated
SCNpilot_cont_300_bf_scaffold_168_curated_8
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9571..12213
DNA (2643bp) protein (881aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003627C80
cirA; Outer membrane receptor protein, mostly Fe transport
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCNpilot_cont_300_bf_scaffold_168_curated_9
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12280..12723)
DNA (444bp) protein (148aa)
Signal-transduction protein with CBS domains n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P3W5_AZOS1
Inosine-5-monophosphate dehydrogenase {ECO:0000313|EMBL:KJC53418.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_168_curated_10
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12768..13616)
DNA (849bp) protein (283aa)
Pirin domain protein n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PYA7_9RHIZ
Pirin domain protein {ECO:0000313|EMBL:CCM78943.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
Pirin domain-containing protein
SCNpilot_cont_300_bf_scaffold_168_curated_11
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13643..14023)
DNA (381bp) protein (127aa)
Putative transmembrane quinol oxidase subunit n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0Q3I3_9RHIZ
Putative transmembrane quinol oxidase subunit {ECO:0000313|EMBL:CCM78942.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
hypothetical protein; K15977 putative oxidoreductase
SCNpilot_cont_300_bf_scaffold_168_curated_12
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14035..14661)
DNA (627bp) protein (209aa)
FMN-dependent NADH-azoreductase {ECO:0000256|HAMAP-Rule:MF_01216}; EC=1.7.-.- {ECO:0000256|HAMAP-Rule:MF_01216};; Azo-dye reductase {ECO:0000256|HAMAP-Rule:MF_01216}; FMN-dependent NADH-azo compound oxidoreductase {ECO:0000256|HAMAP-Rule:MF_01216}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
azoR; FMN-dependent NADH-azoreductase; K01118 FMN-dependent NADH-azoreductase [EC:1.7.-.-]
FMN-dependent NADH-azoreductase n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PQM3_9RHIZ
SCNpilot_cont_300_bf_scaffold_168_curated_13
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14766..15698
DNA (933bp) protein (311aa)
Putative DNA-binding transcriptional regulator n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0Q2T1_9RHIZ
Putative DNA-binding transcriptional regulator {ECO:0000313|EMBL:CCM78940.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
LysR substrate-binding protein
SCNpilot_cont_300_bf_scaffold_168_curated_14
unknown

Not on your lists

comp(15833..16252)
DNA (420bp) protein (140aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_168_curated_15
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16249..17718)
DNA (1470bp) protein (490aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630566
Protein involved in formation of curli polymers {ECO:0000313|EMBL:EJL34460.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_168_curated_16
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18111..18497
DNA (387bp) protein (129aa)
methylmalonyl-CoA epimerase; K05606 methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC460 RepID=V4RFK8_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:GAO38835.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
SCNpilot_cont_300_bf_scaffold_168_curated_17
unknown

Not on your lists

18499..19068
DNA (570bp) protein (190aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_168_curated_18
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19117..19803
DNA (687bp) protein (229aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HNG2_RUBGI
glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:BAL94549.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
SCNpilot_cont_300_bf_scaffold_168_curated_19

Not on your lists

19987..21240
DNA (1254bp) protein (418aa)
Nucleoside H+ symporter n=1 Tax=uncultured organism RepID=T1WA23_9ZZZZ
Nucleoside H+ symporter {ECO:0000313|EMBL:AGU10965.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
proP; ProP protein rbh
SCNpilot_cont_300_bf_scaffold_168_curated_20

Not on your lists

21237..22301
DNA (1065bp) protein (355aa)
Xylose isomerase-like TIM barrel n=1 Tax=uncultured organism RepID=T1W8H6_9ZZZZ
Xylose isomerase-like TIM barrel {ECO:0000313|EMBL:AGU10966.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
xylose isomerase domain-containing protein
SCNpilot_cont_300_bf_scaffold_168_curated_21

Not on your lists

22334..23482
DNA (1149bp) protein (383aa)
Oxidoreductase family, NAD-binding Rossmann fold n=1 Tax=uncultured organism RepID=T1W7L4_9ZZZZ
Oxidoreductase family, NAD-binding Rossmann fold {ECO:0000313|EMBL:AGU10967.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
oxidoreductase-like protein
SCNpilot_cont_300_bf_scaffold_168_curated_22

Not on your lists

23479..23868
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=uncultured organism RepID=T1W897_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:AGU10968.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
cyc; cytochrome C
SCNpilot_cont_300_bf_scaffold_168_curated_23

Not on your lists

23865..24803
DNA (939bp) protein (313aa)
Xylose isomerase-like TIM barrel n=1 Tax=uncultured organism RepID=T1W8Z4_9ZZZZ
Xylose isomerase-like TIM barrel {ECO:0000313|EMBL:AGU10969.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_168_curated_24
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24800..25621
DNA (822bp) protein (274aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002631342
Uncharacterized protein {ECO:0000313|EMBL:AJP74265.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_168_curated_25
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25618..26187
DNA (570bp) protein (190aa)
Gluconate 2-dehydrogenase subunit 3 n=1 Tax=uncultured organism RepID=T1W8I1_9ZZZZ
Transcriptional initiation protein Tat {ECO:0000313|EMBL:AJP74266.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_168_curated_26

Not on your lists

26184..27029
DNA (846bp) protein (282aa)
Xylose isomerase-like TIM barrel n=1 Tax=uncultured organism RepID=T1W7M0_9ZZZZ
Xylose isomerase-like TIM barrel {ECO:0000313|EMBL:AGU10972.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
xylose isomerase domain-containing protein
SCNpilot_cont_300_bf_scaffold_168_curated_27
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27051..28727
DNA (1677bp) protein (559aa)
GMC family oxidoreductase n=1 Tax=Sphingomonas elodea RepID=UPI0002631345
GMC family oxidoreductase {ECO:0000313|EMBL:AJP71263.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
Oxidoreductase, GMC family protein
SCNpilot_cont_300_bf_scaffold_168_curated_28
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28747..29388)
DNA (642bp) protein (214aa)
UbiE/COQ5 family methlytransferase n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EI23_9RHIZ
UbiE/COQ5 family methlytransferase {ECO:0000313|EMBL:CCV03865.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
methyltransferase
SCNpilot_cont_300_bf_scaffold_168_curated_29
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29718..30317
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UEN3_MYXSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGC47376.1}; TaxID=1278073 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8).;"
SCNpilot_cont_300_bf_scaffold_168_curated_30
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30396..31799)
DNA (1404bp) protein (468aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NM28_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS28595.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
GntR family transcriptional regulator
Displaying items 1-30 of 248 in total

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