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SCNpilot_cont_300_bf_scaffold_220_curated

Search features with annotation key words

Displaying items 1-30 of 126 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_220_curated_1
Pseudomonas sp. GM25, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(93..371)
DNA (279bp) protein (93aa)
Putative acyltransferase n=1 Tax=Pseudomonas sp. GM25 RepID=J2Q2V0_9PSED
Putative acyltransferase {ECO:0000313|EMBL:EJM30394.1}; Flags: Precursor;; TaxID=1144327 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM25.;"
acyltransferase
SCNpilot_cont_300_bf_scaffold_220_curated_2
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(852..1223)
DNA (372bp) protein (124aa)
Acyltransferase 3 n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F7N3_9RHIZ
Acyltransferase 3 {ECO:0000313|EMBL:CCV12475.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
acyltransferase 3
SCNpilot_cont_300_bf_scaffold_220_curated_3
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1323..2618)
DNA (1296bp) protein (432aa)
Sugar transferase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VFT4_SPHWW
sugar transferase
Sugar transferase {ECO:0000313|EMBL:ABQ71150.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_cont_300_bf_scaffold_220_curated_4
unknown

Not on your lists

3311..3994
DNA (684bp) protein (228aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_220_curated_5
Methylophaga thiooxydans, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4031..4828
DNA (798bp) protein (266aa)
Glycosyl transferase, group 2 family protein n=1 Tax=Methylophaga thiooxydans DMS010 RepID=C0N9X1_9GAMM
Glycosyl transferase, group 2 family protein {ECO:0000313|EMBL:EEF78466.1}; TaxID=637616 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylophaga thiooxydans DMS010.;"
Putative N-acetylgalactosaminyl-diphosphoundecaprenol glucuronosyltransferase
SCNpilot_cont_300_bf_scaffold_220_curated_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4958..6253
DNA (1296bp) protein (432aa)
nucleotide sugar dehydrogenase (EC:1.1.1.22); K02472 UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.-]
UDP-N-acetyl-D-mannosamine dehydrogenase n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000289A49B
UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase {ECO:0000313|EMBL:AJP72589.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_cont_300_bf_scaffold_220_curated_7
alpha proteobacterium JLT2015, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6266..7336)
DNA (1071bp) protein (357aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium JLT2015 RepID=M2TQ18_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EMD83836.1}; TaxID=1234595 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium JLT2015.;"
peptidase M48, Ste24p
SCNpilot_cont_300_bf_scaffold_220_curated_8
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7775..8008
DNA (234bp) protein (78aa)
hypothetical protein n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B5A432
Uncharacterized protein {ECO:0000313|EMBL:AJP72590.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_cont_300_bf_scaffold_220_curated_9
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8119..8892
DNA (774bp) protein (258aa)
metallophosphoesterase; K07313 serine/threonine protein phosphatase 1 [EC:3.1.3.16]
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036A5C28
Serine/threonine protein phosphatase {ECO:0000313|EMBL:AIT05338.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_300_bf_scaffold_220_curated_10
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8980..9576)
DNA (597bp) protein (199aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
FKBP-type peptidylprolyl isomerase n=1 Tax=Sphingomonas elodea RepID=UPI0002630AF5
FKBP-type peptidylprolyl isomerase
SCNpilot_cont_300_bf_scaffold_220_curated_11
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9670..9876)
DNA (207bp) protein (69aa)
30S ribosomal protein S21 n=1 Tax=Sphingomonas elodea RepID=UPI0002630AF6
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
30S ribosomal protein S21; K02970 small subunit ribosomal protein S21
SCNpilot_cont_300_bf_scaffold_220_curated_12
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10023..10589)
DNA (567bp) protein (189aa)
Uncharacterized protein {ECO:0000313|EMBL:AJP74096.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_cont_300_bf_scaffold_220_curated_13
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10679..11965
DNA (1287bp) protein (429aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium JLT2015 RepID=M2U733_9PROT
Alpha-ketoglutarate permease {ECO:0000313|EMBL:AJP72596.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
alpha-ketoglutarate permease
SCNpilot_cont_300_bf_scaffold_220_curated_14
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12001..12885
DNA (885bp) protein (295aa)
transcriptional regulator n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00035CCED1
Transcriptional regulator {ECO:0000313|EMBL:AJP72594.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
winged helix family two component transcriptional regulator; K02483 two-component system, OmpR family, response regulator
SCNpilot_cont_300_bf_scaffold_220_curated_15
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12920..14152
DNA (1233bp) protein (411aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121, ECO:0000313|EMBL:AJP74515.1}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00035DE580
integral membrane sensor signal transduction histidine kinase
SCNpilot_cont_300_bf_scaffold_220_curated_16
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14241..15152
DNA (912bp) protein (304aa)
intradiol ring-cleavage dioxygenase n=1 Tax=Sphingomonas elodea RepID=UPI0002630AF9
Intradiol ring-cleavage dioxygenase {ECO:0000313|EMBL:AJP72595.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
intradiol ring-cleavage dioxygenase
SCNpilot_cont_300_bf_scaffold_220_curated_17
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15205..15594)
DNA (390bp) protein (130aa)
response regulator n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D9C97D
Response regulator {ECO:0000313|EMBL:AJP72597.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_220_curated_18
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15669..18128)
DNA (2460bp) protein (820aa)
PAS/PAC sensor hybrid histidine kinase n=1 Tax=Sphingomonas elodea RepID=UPI00026313B3
Histidine kinase {ECO:0000313|EMBL:AJP74516.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
Signal transduction histidine kinase
SCNpilot_cont_300_bf_scaffold_220_curated_19
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18128..19429)
DNA (1302bp) protein (434aa)
signal peptide protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC3CF
Signal peptide protein {ECO:0000313|EMBL:AJP74517.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_220_curated_20
Sphingomonas elodea, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19999..21303
DNA (1305bp) protein (435aa)
UDP-glucose dehydrogenase {ECO:0000313|EMBL:ABP01356.2}; EC=1.1.1.22 {ECO:0000313|EMBL:ABP01356.2};; TaxID=179878 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas elodea.;"
UDP-glucose 6-dehydrogenase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00037A7E04
UDP-glucose-6-dehydrogenase
SCNpilot_cont_300_bf_scaffold_220_curated_21
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21329..22153
DNA (825bp) protein (275aa)
nitrilase n=1 Tax=Sphingomonas elodea RepID=UPI0002632134
Nitrilase {ECO:0000313|EMBL:AJP72463.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
SCNpilot_cont_300_bf_scaffold_220_curated_22
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22150..23523
DNA (1374bp) protein (458aa)
glutamate/cysteine ligase (EC:6.3.2.2); K01919 glutamate--cysteine ligase [EC:6.3.2.2]
glutamate--cysteine ligase n=1 Tax=Sphingomonas elodea RepID=UPI0002632234
Glutamate--cysteine ligase {ECO:0000313|EMBL:AJP73018.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_cont_300_bf_scaffold_220_curated_23
unknown

Not on your lists

comp(23570..23809)
DNA (240bp) protein (80aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_220_curated_24
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24009..24689
DNA (681bp) protein (227aa)
PAS domain S-box protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H7Y0_9BRAD
PAS domain S-box protein {ECO:0000313|EMBL:ERF80848.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
putative PAS/PAC sensor protein
SCNpilot_cont_300_bf_scaffold_220_curated_25
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24774..25667
DNA (894bp) protein (298aa)
ATPase n=1 Tax=Sphingobium lactosutens DS20 RepID=T0H8Z5_9SPHN
ATPase {ECO:0000313|EMBL:AJP72441.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
BadF/BadG/BcrA/BcrD type ATPase
SCNpilot_cont_300_bf_scaffold_220_curated_26
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25657..26538
DNA (882bp) protein (294aa)
sugar isomerase (SIS); K07106 N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]
UPI0003D63661 related cluster n=1 Tax=unknown RepID=UPI0003D63661
N-acetylmuramic acid-6-phosphate etherase {ECO:0000313|EMBL:AJP72435.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_cont_300_bf_scaffold_220_curated_27
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26535..27662
DNA (1128bp) protein (376aa)
N-acetylglucosamine-6-phosphate deacetylase (EC:3.5.1.25); K01443 N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; Flags: Precursor;; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000380F2B1
SCNpilot_cont_300_bf_scaffold_220_curated_28
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27671..28756)
DNA (1086bp) protein (362aa)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=1234597 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium M86.;"
dTDP-glucose 4,6-dehydratase; K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
dTDP-glucose 4,6-dehydratase n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225DF89
SCNpilot_cont_300_bf_scaffold_220_curated_29
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28753..29652)
DNA (900bp) protein (300aa)
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24); K00973 glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Sphingomonas paucimobilis RepID=Q842L6_SPHPI
SCNpilot_cont_300_bf_scaffold_220_curated_30
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29806..30765
DNA (960bp) protein (320aa)
Sulfate adenylyltransferase subunit 2 {ECO:0000256|HAMAP-Rule:MF_00064}; EC=2.7.7.4 {ECO:0000256|HAMAP-Rule:MF_00064};; ATP-sulfurylase small subunit {ECO:0000256|HAMAP-Rule:MF_00064}; Sulfate adenylate transferase {ECO:0000256|HAMAP-Rule:MF_00064}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
sulfate adenylyltransferase small subunit (EC:2.7.7.4)
sulfate adenylyltransferase subunit 2 n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003691E15
Displaying items 1-30 of 126 in total

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