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SCNpilot_cont_300_bf_scaffold_772_curated

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_772_curated_1
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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100..1005
DNA (906bp) protein (302aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000380E93E
Uncharacterized protein {ECO:0000313|EMBL:AJA07289.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
SCNpilot_cont_300_bf_scaffold_772_curated_2
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1820..2311
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037C85B8
Uncharacterized protein {ECO:0000313|EMBL:AJA07290.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_772_curated_3
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2393..3406
DNA (1014bp) protein (338aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI0003662082
Uncharacterized protein {ECO:0000313|EMBL:AJA07291.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_772_curated_4
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3556..3882)
DNA (327bp) protein (109aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036F4CA3
Uncharacterized protein {ECO:0000313|EMBL:AJA07292.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_772_curated_5
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3947..4174
DNA (228bp) protein (76aa)
Uncharacterized protein {ECO:0000313|EMBL:AJA07293.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
SCNpilot_cont_300_bf_scaffold_772_curated_6
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4349..4651
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00035E09E7
Uncharacterized protein {ECO:0000313|EMBL:AHE53739.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_772_curated_7
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4648..6696
DNA (2049bp) protein (683aa)
conjugal transfer protein TraD n=1 Tax=Sphingomonas melonis RepID=UPI0003761EB3
Conjugal transfer protein TraD {ECO:0000313|EMBL:AHE53740.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
VirD4/TraD-like protein
SCNpilot_cont_300_bf_scaffold_772_curated_8
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6693..9671
DNA (2979bp) protein (993aa)
TrwC protein n=1 Tax=Sphingomonas melonis RepID=UPI00037AE02E
TrwC protein {ECO:0000313|EMBL:AJA07296.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
traI/trwC-like protein
SCNpilot_cont_300_bf_scaffold_772_curated_9
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9661..10170
DNA (510bp) protein (170aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036FC3FC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA93101.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_cont_300_bf_scaffold_772_curated_10
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10221..11462)
DNA (1242bp) protein (414aa)
Integrase n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0GBY7_9SPHN
Integrase {ECO:0000313|EMBL:EQA98166.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
integrase
SCNpilot_cont_300_bf_scaffold_772_curated_11
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11617..12165)
DNA (549bp) protein (183aa)
DNA repair protein RadC n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E2CA52
DNA repair protein RadC {ECO:0000313|EMBL:AJP71051.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
DNA repair protein RadC; K03630 DNA repair protein RadC
SCNpilot_cont_300_bf_scaffold_772_curated_12
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12305..12658
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI00026302F1
hypothetical protein; K02116 ATP synthase protein I
Uncharacterized protein {ECO:0000313|EMBL:AGH48946.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_300_bf_scaffold_772_curated_13
Erythrobacter sp. SD-21, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12655..13428
DNA (774bp) protein (258aa)
F0F1 ATP synthase subunit A (EC:3.6.3.14)
F0F1 ATP synthase subunit A n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E0A732
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; TaxID=161528 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. SD-21.;"
SCNpilot_cont_300_bf_scaffold_772_curated_14
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13473..13706
DNA (234bp) protein (78aa)
H+-transporting two-sector ATPase C; K02110 F-type H+-transporting ATPase subunit c [EC:3.6.3.14]
F0F1 ATP synthase subunit C n=1 Tax=Sphingomonas RepID=UPI00026302EF
ATP synthase subunit C {ECO:0000313|EMBL:AJP71054.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_cont_300_bf_scaffold_772_curated_15
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13723..14217
DNA (495bp) protein (165aa)
H+-transporting two-sector ATPase subunit B/B'; K02109 F-type H+-transporting ATPase subunit b [EC:3.6.3.14]
H+-transporting two-sector ATPase subunit B/B'''' n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000287CBB8
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_cont_300_bf_scaffold_772_curated_16
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14210..14761
DNA (552bp) protein (184aa)
H+-transporting two-sector ATPase subunit B/B'; K02109 F-type H+-transporting ATPase subunit b [EC:3.6.3.14]
ATP synthase subunit B n=1 Tax=Sphingomonas elodea RepID=UPI00026302ED
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
SCNpilot_cont_300_bf_scaffold_772_curated_17
unknown

Not on your lists

14879..15070
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_772_curated_18
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15117..15866)
DNA (750bp) protein (250aa)
Putative methyltransferase n=1 Tax=Caulobacter sp. AP07 RepID=J2H5L2_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:AJP71058.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_772_curated_19
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16014..17936
DNA (1923bp) protein (641aa)
excinuclease ABC subunit C n=1 Tax=Sphingomonas elodea RepID=UPI00026302EB
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
uvrC; UvrABC system protein C; K03703 excinuclease ABC subunit C
SCNpilot_cont_300_bf_scaffold_772_curated_20
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18034..20829
DNA (2796bp) protein (932aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI00026302E9
Uncharacterized protein {ECO:0000313|EMBL:AJP71060.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_772_curated_21
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20858..21838
DNA (981bp) protein (327aa)
polysaccharide deacetylase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC8DE
Polysaccharide deacetylase {ECO:0000313|EMBL:AJP71062.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
polysaccharide deacetylase
SCNpilot_cont_300_bf_scaffold_772_curated_22
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21835..22788
DNA (954bp) protein (318aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC8DD
Uncharacterized protein {ECO:0000313|EMBL:KHA64090.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_772_curated_23
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22834..23565
DNA (732bp) protein (244aa)
DNA repair protein RecO n=1 Tax=Sphingomonas elodea RepID=UPI0002630469
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
DNA repair protein recO; K03584 DNA repair protein RecO (recombination protein O)
SCNpilot_cont_300_bf_scaffold_772_curated_24
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23614..24666
DNA (1053bp) protein (351aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D6FE1C
SCNpilot_cont_300_bf_scaffold_772_curated_25
unknown

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24663..24767
DNA (105bp) protein (35aa)

This feature has no annotations

Displaying 25 items

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