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SCNpilot_cont_300_bf_scaffold_175_curated

Search features with annotation key words

Displaying items 1-30 of 122 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_175_curated_1
unknown

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189..536
DNA (348bp) protein (116aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_175_curated_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(614..1300)
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C3A6
phage transcriptional regulator, AlpA; K07733 prophage regulatory protein
Phage transcriptional regulator, AlpA {ECO:0000313|EMBL:ABJ07194.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_cont_300_bf_scaffold_175_curated_3
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2108..3589)
DNA (1482bp) protein (494aa)
tryptophan halogenase n=1 Tax=Caulobacter RepID=UPI0003668810
tryptophan halogenase
Tryptophan halogenase {ECO:0000313|EMBL:ABZ70982.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_175_curated_4

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comp(3600..4637)
DNA (1038bp) protein (346aa)
Cupin-like domain n=1 Tax=uncultured organism RepID=T1WA36_9ZZZZ
Cupin-like domain {ECO:0000313|EMBL:AGU10980.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
transcription factor jumonji jmjc domain-containing protein
SCNpilot_cont_300_bf_scaffold_175_curated_5

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comp(4634..5341)
DNA (708bp) protein (236aa)
SapC n=1 Tax=uncultured organism RepID=T1W903_9ZZZZ
SapC {ECO:0000313|EMBL:AGU10979.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
SapC family protein
SCNpilot_cont_300_bf_scaffold_175_curated_6

Not on your lists

comp(5490..8636)
DNA (3147bp) protein (1049aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F94236
TonB-dependent Receptor Plug Domain {ECO:0000313|EMBL:AGU10961.1}; Flags: Fragment;; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
TonB-dependent receptor
SCNpilot_cont_300_bf_scaffold_175_curated_7
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8975..9418)
DNA (444bp) protein (148aa)
methionine sulfoxide reductase B (EC:1.8.4.12)
Peptide methionine sulfoxide reductase MsrB {ECO:0000256|HAMAP-Rule:MF_01400}; EC=1.8.4.12 {ECO:0000256|HAMAP-Rule:MF_01400};; Peptide-methionine (R)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01400}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
Peptide methionine sulfoxide reductase MsrB n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SJZ9_9SPHN
SCNpilot_cont_300_bf_scaffold_175_curated_8
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9455..9709
DNA (255bp) protein (85aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D413E0
Sphingomonas taxi strain 30a NODE_3, whole genome shotgun sequence {ECO:0000313|EMBL:KIU30097.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_175_curated_9
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9673..10716)
DNA (1044bp) protein (348aa)
putative L-carnitine dehydratase (EC:2.8.3.-)
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI0002D3CF7A
CoA-transferase family III family protein {ECO:0000313|EMBL:EGF95542.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
SCNpilot_cont_300_bf_scaffold_175_curated_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10767..11549)
DNA (783bp) protein (261aa)
3-oxoacyl-[acyl-carrier protein] reductase {ECO:0000313|EMBL:GAO55142.1}; EC=1.1.1.100 {ECO:0000313|EMBL:GAO55142.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Short-chain dehydrogenase/reductase SDR n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9F8_NOVAD
short-chain dehydrogenase/reductase SDR
SCNpilot_cont_300_bf_scaffold_175_curated_11
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11567..12742)
DNA (1176bp) protein (392aa)
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:KFD29784.1}; EC=2.3.1.9 {ECO:0000313|EMBL:KFD29784.1};; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
acetyl-CoA acetyltransferase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
PREDICTED: 3-ketoacyl-CoA thiolase, mitochondrial-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C193ED
SCNpilot_cont_300_bf_scaffold_175_curated_12
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13047..13418
DNA (372bp) protein (124aa)
two component response regulator PhoB n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000289E162
response regulator receiver
BaeS protein {ECO:0000313|EMBL:BAQ45515.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
SCNpilot_cont_300_bf_scaffold_175_curated_13
Asticcacaulis excentricus, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13547..14044)
DNA (498bp) protein (166aa)
twitching motility protein PilT n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC4A0
pilt protein domain protein; K07062
PilT protein domain protein {ECO:0000313|EMBL:ADU14963.1}; TaxID=573065 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis excentricus (strain ATCC 15261 / DSM 4724 / VKM B-1370 /; CB 48).;"
SCNpilot_cont_300_bf_scaffold_175_curated_14
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14044..14268)
DNA (225bp) protein (75aa)
prevent-host-death protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC49F
Uncharacterized protein {ECO:0000313|EMBL:EQB34208.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
prevent-host-death family protein
SCNpilot_cont_300_bf_scaffold_175_curated_15
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14473..15840
DNA (1368bp) protein (456aa)
potassium transporter n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E43F63
Potassium transporter {ECO:0000313|EMBL:EQB34209.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
sodium/hydrogen exchanger
SCNpilot_cont_300_bf_scaffold_175_curated_16
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15899..17107
DNA (1209bp) protein (403aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI0003817C37
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_cont_300_bf_scaffold_175_curated_17
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17153..18676)
DNA (1524bp) protein (508aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0IZK0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB34210.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
tryptophan halogenase
SCNpilot_cont_300_bf_scaffold_175_curated_18
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18763..20373)
DNA (1611bp) protein (537aa)
Beta-xylosidase n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MWK9_9SPHN
Xylan 1,4-beta-xylosidase {ECO:0000313|EMBL:AJP74479.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
glycoside hydrolase family protein
SCNpilot_cont_300_bf_scaffold_175_curated_19
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20559..22193
DNA (1635bp) protein (545aa)
hypothetical protein n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI00035DC0E8
Uncharacterized protein {ECO:0000313|EMBL:AJP73049.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
cytochrome P450-like protein
SCNpilot_cont_300_bf_scaffold_175_curated_20
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22175..23761
DNA (1587bp) protein (529aa)
hypothetical protein n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI000366D3D4
Uncharacterized protein {ECO:0000313|EMBL:AJP73048.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
peroxidase
SCNpilot_cont_300_bf_scaffold_175_curated_21
Pelagibaca bermudensis, Pelagibaca, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23758..24993
DNA (1236bp) protein (412aa)
hypothetical protein n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI00036F5E06
Cytochrome P450-like protein {ECO:0000313|EMBL:EAU47148.1}; TaxID=314265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pelagibaca.;" source="Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601).;"
putative Cytochrome P450
SCNpilot_cont_300_bf_scaffold_175_curated_22
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24997..26028)
DNA (1032bp) protein (344aa)
Aldo/keto reductase family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WVH9_9SPHN
DNA, contig: SP613 {ECO:0000313|EMBL:GAN12827.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
aldo/keto reductase
SCNpilot_cont_300_bf_scaffold_175_curated_23
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26343..29486
DNA (3144bp) protein (1048aa)
TonB-dependent receptor n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S2A3_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:AGH50145.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
TonB-dependent receptor
SCNpilot_cont_300_bf_scaffold_175_curated_24
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29616..30503
DNA (888bp) protein (296aa)
ROK family protein; K00847 fructokinase [EC:2.7.1.4]
fructokinase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D47A30
Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
SCNpilot_cont_300_bf_scaffold_175_curated_25
unknown

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comp(30521..30889)
DNA (369bp) protein (123aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_175_curated_26
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30917..31540)
DNA (624bp) protein (208aa)
DNA-3-methyladenine glycosylase II n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CDDF4
DNA glycosylase {ECO:0000313|EMBL:AJP73042.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
HhH-GPD family protein
SCNpilot_cont_300_bf_scaffold_175_curated_27
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31604..31921
DNA (318bp) protein (106aa)
ferredoxin n=1 Tax=Sphingomonas elodea RepID=UPI00026306D1
DNA, contig: SP601 {ECO:0000313|EMBL:GAN11977.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
ferredoxin; K04755 ferredoxin, 2Fe-2S
SCNpilot_cont_300_bf_scaffold_175_curated_28
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31958..32704)
DNA (747bp) protein (249aa)
RNA methyltransferase; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
RNA 2'-O ribose methyltransferase substrate binding family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WZB5_9SPHN
DNA, contig: SP601 {ECO:0000313|EMBL:GAN11976.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
SCNpilot_cont_300_bf_scaffold_175_curated_29
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32704..34329)
DNA (1626bp) protein (542aa)
peptidase M28 n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002DC1044
Peptidase M28 {ECO:0000313|EMBL:AJP73039.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
peptidase M28
SCNpilot_cont_300_bf_scaffold_175_curated_30
Sphingobium indicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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34685..35824
DNA (1140bp) protein (380aa)
Transposase n=1 Tax=Sphingobium indicum B90A RepID=I5B980_9SPHN
Transposase {ECO:0000313|EMBL:EIM66132.1}; TaxID=861109 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium indicum B90A.;"
transposase
Displaying items 1-30 of 122 in total

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