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SCNpilot_cont_300_bf_scaffold_266_curated

Search features with annotation key words

Displaying items 1-30 of 65 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_266_curated_1
unknown

Not on your lists

comp(2..157)
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_266_curated_2
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(347..2728)
DNA (2382bp) protein (794aa)
Putative TonB-dependent receptor n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YNN1_9SPHN
Putative TonB-dependent receptor {ECO:0000313|EMBL:GAD50455.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
TonB-dependent receptor-like protein
SCNpilot_cont_300_bf_scaffold_266_curated_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2715..3656)
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI00036D6F09
Uncharacterized protein {ECO:0000313|EMBL:AJP74267.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
anti-FecI sigma factor FecR
SCNpilot_cont_300_bf_scaffold_266_curated_4
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3690..4202)
DNA (513bp) protein (171aa)
Putative RNA polymerase ECF-type sigma factor n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A6T3_9SPHN
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:AJP71264.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
ECF subfamily RNA polymerase sigma-24 factor
SCNpilot_cont_300_bf_scaffold_266_curated_5
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4282..5787)
DNA (1506bp) protein (502aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002E07462
DNA, contig: SP662 {ECO:0000313|EMBL:GAN15629.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_266_curated_6
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5998..6399)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI00024885E6
Uncharacterized protein {ECO:0000313|EMBL:AHE57194.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_266_curated_7
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6516..7130)
DNA (615bp) protein (205aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI0003817B95
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB65760.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_cont_300_bf_scaffold_266_curated_8
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7130..8749)
DNA (1620bp) protein (540aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000362100E
hypothetical protein
Sulphate transporter {ECO:0000313|EMBL:ABS69391.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_cont_300_bf_scaffold_266_curated_9
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8918..9451)
DNA (534bp) protein (178aa)
Response regulator receiver protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GT07_SPHAL
Response regulator receiver protein {ECO:0000313|EMBL:KGB59077.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
response regulator receiver protein; K15012 two-component system, response regulator RegA
SCNpilot_cont_300_bf_scaffold_266_curated_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9448..10740)
DNA (1293bp) protein (431aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121, ECO:0000313|EMBL:AJP74151.1}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S1B3_9SPHN
integral membrane sensor signal transduction histidine kinase
SCNpilot_cont_300_bf_scaffold_266_curated_11
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10737..11447)
DNA (711bp) protein (237aa)
Surfeit locus 1 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WHP2_9SPHN
Surfeit locus 1 {ECO:0000313|EMBL:ENY82991.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
Surfeit locus 1; K14998 surfeit locus 1 family protein
SCNpilot_cont_300_bf_scaffold_266_curated_12
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11444..11845)
DNA (402bp) protein (134aa)
Cytochrome o ubiquinol oxidase subunit IV n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YHP5_9SPHN
Cytochrome o ubiquinol oxidase subunit IV {ECO:0000313|EMBL:GAD47447.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
cytochrome C oxidase subunit IV; K02300 cytochrome o ubiquinol oxidase operon protein cyoD
SCNpilot_cont_300_bf_scaffold_266_curated_13
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11842..12471)
DNA (630bp) protein (210aa)
cytochrome c oxidase subunit III; K02299 cytochrome o ubiquinol oxidase subunit III [EC:1.10.3.-]
Cytochrome o ubiquinol oxidase subunit III n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WE69_9SPHN
Cytochrome o ubiquinol oxidase subunit III {ECO:0000313|EMBL:EIZ78503.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
SCNpilot_cont_300_bf_scaffold_266_curated_14
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12475..14478)
DNA (2004bp) protein (668aa)
cytochrome-c oxidase; K02298 cytochrome o ubiquinol oxidase subunit I [EC:1.10.3.-]
Cytochrome o ubiquinol oxidase subunit I n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YH92_9SPHN
Cytochrome O ubiquinol oxidase {ECO:0000313|EMBL:AHE57261.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
SCNpilot_cont_300_bf_scaffold_266_curated_15
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14493..15671)
DNA (1179bp) protein (393aa)
ubiquinol oxidase subunit II; K02297 cytochrome o ubiquinol oxidase subunit II [EC:1.10.3.-]
Cytochrome o ubiquinol oxidase subunit II n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZQ02_9SPHN
Cytochrome o ubiquinol oxidase subunit II {ECO:0000313|EMBL:GAD47444.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
SCNpilot_cont_300_bf_scaffold_266_curated_16
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15837..17162
DNA (1326bp) protein (442aa)
General substrate transporter n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WHN7_9SPHN
General substrate transporter {ECO:0000313|EMBL:KGB56696.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
general substrate transporter
SCNpilot_cont_300_bf_scaffold_266_curated_17
unknown

Not on your lists

comp(17203..17364)
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_266_curated_18
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17431..17931)
DNA (501bp) protein (167aa)
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCNpilot_cont_300_bf_scaffold_266_curated_19
unknown

Not on your lists

comp(17931..18272)
DNA (342bp) protein (114aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_266_curated_20
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18552..19262
DNA (711bp) protein (237aa)
GntR family transcriptional regulator n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00037A791F
GntR family transcriptional regulator {ECO:0000313|EMBL:AJA07329.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
GntR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_266_curated_21
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19446..21701
DNA (2256bp) protein (752aa)
TonB-denpendent receptor n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CA6C8
TonB-dependent receptor
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
SCNpilot_cont_300_bf_scaffold_266_curated_22
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21769..23373
DNA (1605bp) protein (535aa)
AMP-dependent synthetase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CCEA1
AMP-dependent synthetase and ligase
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ABZ71987.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_266_curated_23
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23662..25290)
DNA (1629bp) protein (543aa)
Carboxylic ester hydrolase; EC=3.1.1.-;; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
carboxylesterase type B; K03929 para-nitrobenzyl esterase [EC:3.1.1.-]
carboxylesterase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CCEA2
SCNpilot_cont_300_bf_scaffold_266_curated_24
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25287..26564)
DNA (1278bp) protein (426aa)
MFS transporter n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CA6C5
major facilitator transporter
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCNpilot_cont_300_bf_scaffold_266_curated_25
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26700..27386
DNA (687bp) protein (229aa)
Transcriptional regulator, TetR family n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RFK5_PHEZH
transcriptional regulator, TetR family
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ACG77086.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_300_bf_scaffold_266_curated_26
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27470..28363
DNA (894bp) protein (298aa)
Short-chain alcohol dehydrogenase-like protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RFK9_PHEZH
short-chain alcohol dehydrogenase-like protein
Short-chain alcohol dehydrogenase-like protein {ECO:0000313|EMBL:ACG77090.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_300_bf_scaffold_266_curated_27
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28360..29676
DNA (1317bp) protein (439aa)
glycoside hydrolase family protein; K05350 beta-glucosidase [EC:3.2.1.21]
Glycoside hydrolase family protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UYI2_9SPHN
Glycoside hydrolase family protein {ECO:0000313|EMBL:ENY83289.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_cont_300_bf_scaffold_266_curated_28
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29859..31652)
DNA (1794bp) protein (598aa)
ABC transporter related n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VFW6_SPHWW
ABC transporter-like protein; K06147 ATP-binding cassette, subfamily B, bacterial
ABC transporter related {ECO:0000313|EMBL:ABQ71182.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_cont_300_bf_scaffold_266_curated_29
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31935..32234
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CAB6E
Uncharacterized protein {ECO:0000313|EMBL:KER82223.1}; TaxID=454957 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. celebensis.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_266_curated_30
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32252..33436
DNA (1185bp) protein (395aa)
Arabinose efflux permease family protein n=1 Tax=Caulobacter sp. AP07 RepID=J2ZN22_9CAUL
Arabinose efflux permease family protein {ECO:0000313|EMBL:EJL20489.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
major facilitator superfamily protein
Displaying items 1-30 of 65 in total

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