ggKbase home page

SCNpilot_cont_300_bf_scaffold_788_curated_24

Organism: scnpilot_dereplicated_Sphingomonas_2

near complete RP 51 / 55 BSCG 51 / 51 ASCG 11 / 38 MC: 1
Location: comp(20262..20828)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Novosphingobium sp. AP12 RepID=J3ACS5_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 76.6
  • Coverage: 188.0
  • Bit_score: 288
  • Evalue 4.40e-75
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 76.6
  • Coverage: 188.0
  • Bit_score: 288
  • Evalue 6.20e-75
ECF subfamily RNA polymerase sigma-70 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 51.4
  • Coverage: 181.0
  • Bit_score: 186
  • Evalue 5.70e-45

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Novosphingobium sp. AP12 → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 567
ATGATCGATACGGCAGCCAGCGCAAGCAGAGAAAGGCTCGTCGCCAGCCTCGCCCGAGTCGCCGAAGGCGATCAGGCAGCACTGCGCGCCGTATATGACGCGACCGCCGCGAAGCTTTTTGGCGTGTGCCTTCGTATCTCCGGAGATCGCGAAGCCGCCGAGGATATTTTGCAGCAAGTCTATCTCAAGGTTTGGGACCGTGCCGGGCGCTTCGACCCAGAACGCGCGAGCCCGATTACCTGGCTATGCGCCATCGCCCGAAACACCGCGATCGATTGGCGGCGGGCCAATGGTGGTGCAACACATCTCCCGGAAAATGCGGCTGCGGCTGTTGCCGACGACAGCCCATTGGCGCCCGAGGTGATCGACGCGGCCACGCAGCGCGCGCGGATCTTCGACTGCCTGGAGGCACTGGAGGAGCGCCCACGCCGCGCGATCCGCGCGGCGTTCTTCGATGGGCTCACCTATTCGCAGCTCGCGGAGGCAATGGCGGTGCCGCTCGGCACGCTCAAGAGCTGGGTGCGCCGCGGCCTGATTCAGCTCAGGGGGTGCCTGGGCGATGCCTGA
PROTEIN sequence
Length: 189
MIDTAASASRERLVASLARVAEGDQAALRAVYDATAAKLFGVCLRISGDREAAEDILQQVYLKVWDRAGRFDPERASPITWLCAIARNTAIDWRRANGGATHLPENAAAAVADDSPLAPEVIDAATQRARIFDCLEALEERPRRAIRAAFFDGLTYSQLAEAMAVPLGTLKSWVRRGLIQLRGCLGDA*