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SCNpilot_cont_300_bf_scaffold_788_curated

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_788_curated_1
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(110..343)
DNA (234bp) protein (78aa)
hypothetical protein n=1 Tax=Janthinobacterium sp. CG3 RepID=UPI000348909F
toxin secretion ABC transporter ATP-binding protein, HlyB family; K13409 ATP-binding cassette, subfamily B, bacterial RaxB
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
SCNpilot_cont_300_bf_scaffold_788_curated_2
Sphingobium sp. HDIP04, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(340..1596)
DNA (1257bp) protein (419aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0HS38_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB00349.1}; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. HDIP04.;"
secretion protein; K13408 membrane fusion protein RaxA
SCNpilot_cont_300_bf_scaffold_788_curated_3
unknown

Not on your lists

comp(1799..3736)
DNA (1938bp) protein (646aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_788_curated_4
unknown

Not on your lists

comp(3763..4314)
DNA (552bp) protein (184aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_788_curated_5
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4429..4755
DNA (327bp) protein (109aa)
transposase n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C0A3
Transposase {ECO:0000313|EMBL:KHA63303.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
transposase
SCNpilot_cont_300_bf_scaffold_788_curated_6
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4772..5263)
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B4317F
Uncharacterized protein {ECO:0000313|EMBL:EYR68735.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_788_curated_7
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5290..6732)
DNA (1443bp) protein (481aa)
Beta-lactamase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GNS1_SPHAL
Uncharacterized protein {ECO:0000313|EMBL:KGM55796.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
beta-lactamase
SCNpilot_cont_300_bf_scaffold_788_curated_8
unknown

Not on your lists

6916..8019
DNA (1104bp) protein (368aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_788_curated_9
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8191..8916)
DNA (726bp) protein (242aa)
Putative enzyme {ECO:0000313|EMBL:CDX29861.1}; EC=1.-.-.- {ECO:0000313|EMBL:CDX29861.1};; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
UPI0003CED657 related cluster n=1 Tax=unknown RepID=UPI0003CED657
SDR-family protein
SCNpilot_cont_300_bf_scaffold_788_curated_10
Mesorhizobium sp. LSHC426A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9066..9962
DNA (897bp) protein (299aa)
UPI0003CDD204 related cluster n=1 Tax=unknown RepID=UPI0003CDD204
AraC family transcriptional regulator {ECO:0000313|EMBL:ESX52357.1}; TaxID=1287298 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC426A00.;"
putative AraC family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_788_curated_11
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10204..10992)
DNA (789bp) protein (263aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000380D37B
Uncharacterized protein {ECO:0000313|EMBL:AHE51974.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_788_curated_12
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10989..11819)
DNA (831bp) protein (277aa)
UPF0276 protein PMI04_03162 n=1 Tax=Sphingobium sp. AP49 RepID=J2WE52_9SPHN
UPF0276 protein PMI04_03162 {ECO:0000256|HAMAP-Rule:MF_00697}; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
hypothetical protein; K09930 hypothetical protein
SCNpilot_cont_300_bf_scaffold_788_curated_13
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11883..12161)
DNA (279bp) protein (93aa)
UPI0003D5BBAF related cluster n=1 Tax=unknown RepID=UPI0003D5BBAF
Uncharacterized protein {ECO:0000313|EMBL:ETI65672.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_788_curated_14
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12245..12886)
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9DC12_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:AHE51971.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_788_curated_15
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12883..13422)
DNA (540bp) protein (180aa)
UPI0003D5F25A related cluster n=1 Tax=unknown RepID=UPI0003D5F25A
RNA polymerase sigma70 {ECO:0000313|EMBL:AHE51970.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
Putative RNA polymerase ECF-type sigma factor
SCNpilot_cont_300_bf_scaffold_788_curated_16
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13631..13909
DNA (279bp) protein (93aa)
UPI0003D66B0C related cluster n=1 Tax=unknown RepID=UPI0003D66B0C
Membrane protein {ECO:0000313|EMBL:ETI65669.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_788_curated_17
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13966..14430
DNA (465bp) protein (155aa)
hypothetical protein n=2 Tax=Sphingobium xenophagum RepID=UPI0002DB06EC
Uncharacterized protein {ECO:0000313|EMBL:AHE51968.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
DoxX family protein; K15977 putative oxidoreductase
SCNpilot_cont_300_bf_scaffold_788_curated_18
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14390..15199)
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003753B93
Transcriptional regulator {ECO:0000313|EMBL:EZP52361.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
Crp/Fnr family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_788_curated_19
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15377..16327
DNA (951bp) protein (317aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NFZ4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EAT10061.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_788_curated_20
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16353..17345
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. AP49 RepID=J2KU64_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJK78666.1}; Flags: Precursor;; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_788_curated_21
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17349..18695
DNA (1347bp) protein (449aa)
Divalent metal cation transporter MntH n=1 Tax=Sphingobium sp. AP49 RepID=J2D7Q0_9SPHN
Divalent metal cation transporter MntH {ECO:0000256|HAMAP-Rule:MF_00221}; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
metal ion transporter; K03322 manganese transport protein
SCNpilot_cont_300_bf_scaffold_788_curated_22
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18927..19487)
DNA (561bp) protein (187aa)
Secreted/surface protein with fasciclin-like repeats n=1 Tax=Novosphingobium sp. AP12 RepID=J3AB57_9SPHN
Secreted/surface protein with fasciclin-like repeats {ECO:0000313|EMBL:EJL29296.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
beta-Ig-H3/fasciclin
SCNpilot_cont_300_bf_scaffold_788_curated_23
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19568..20269)
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2GH00_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJL29295.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_788_curated_24
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20262..20828)
DNA (567bp) protein (189aa)
RNA polymerase sigma factor n=1 Tax=Novosphingobium sp. AP12 RepID=J3ACS5_9SPHN
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
ECF subfamily RNA polymerase sigma-70 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_300_bf_scaffold_788_curated_25
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21179..21376)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0GRJ1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB06516.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_788_curated_26
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21445..21657)
DNA (213bp) protein (71aa)
cold-shock protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037ABA44
Cold-shock protein {ECO:0000313|EMBL:KHA64206.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
cold-shock DNA-binding protein family protein; K03704 cold shock protein (beta-ribbon, CspA family)
SCNpilot_cont_300_bf_scaffold_788_curated_27
unknown

Not on your lists

22206..22379
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_788_curated_28
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22548..22829
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002DA9F1C
Uncharacterized protein {ECO:0000313|EMBL:AHE52364.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
SCNpilot_cont_300_bf_scaffold_788_curated_29
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22900..23112
DNA (213bp) protein (71aa)
Cold-shock DNA-binding protein family protein n=2 Tax=Novosphingobium nitrogenifigens RepID=F1Z5K7_9SPHN
Cold-shock DNA-binding protein family protein {ECO:0000313|EMBL:KHS48337.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family)
Displaying 29 items

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