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SCNpilot_cont_300_bf_scaffold_162_curated_14

Organism: scnpilot_dereplicated_Sphingomonas_1

near complete RP 52 / 55 BSCG 50 / 51 ASCG 11 / 38
Location: 8807..10063

Top 3 Functional Annotations

Value Algorithm Source
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 88.3
  • Coverage: 418.0
  • Bit_score: 745
  • Evalue 3.10e-212
transcription termination factor Rho n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B5DCF5 similarity UNIREF
DB: UNIREF100
  • Identity: 95.9
  • Coverage: 418.0
  • Bit_score: 785
  • Evalue 2.50e-224
rho; transcription termination factor Rho; K03628 transcription termination factor Rho similarity KEGG
DB: KEGG
  • Identity: 88.3
  • Coverage: 418.0
  • Bit_score: 745
  • Evalue 7.00e-213

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Taxonomy

Sphingomonas wittichii → Sphingomonas → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1257
ATGCACTTGAAAGATTTGAAGAAGAAAGCTCCGGCGGAACTGGTCCAGCTGGCCGAGGAGCTTGGCGTCGAGGGTGCCTCCACCCTCCGCAAGCAGGACCTGATGTTCGCCATCCTCAAGGTCCAGGCCGAGAACGGCGACCAGATCATGGGCGAAGGCACGATCGAGGTGCTGCCCGACGGCTTCGGCTTCCTGCGCAGCGCGCAGGCGAATTACCTCGCCGGGCCGGACGACATCTATGTCTCGCCAAACCAGGTCCGCAAGTTCGGCCTGCGCACCGGCGACACGGTGGAAGGCGAGATTCGCGCGCCGAAGGACGGCGAGCGCTATTTCGCGCTGACCAAGCTCTCCACCGTCAATTACGAGGACCCCGACCGGGTCCGCCATCGCGTCAACTTCGACAACCTCACGCCCCTCTACCCGGACGAGCGGCTGAAGATGGAAATCGAGGACCCGACGATCAAGGACAAGTCGGGCCGCGTGCTCGACGTGGTCGCGCCGATCGGCAAGGGCCAGCGCTGCCTGATCGTCGCCCCGCCGCGCGTCGGCAAGACGATCATGATGCAGAACATCGCGCGGGCGATCTCGATCAACCACCCGGAAGTGTTCCTGATCGTGCTGCTGATCGACGAGCGGCCCGAGGAAGTGACCGACATGCAGCGCACGGTGAACGGCGAGGTGGTCTCCTCCACCTTCGACGAGCCGGCGACGCGCCACGTCCAGGTCGCCGAGATGGTGATCGAGAAGGCCAAGCGCCTCGTCGAGCACAAGAAGGACGTGGTGATCCTGCTCGACAACATCACCCGCCTCGGCCGCGCCTACAACACCGTCGTCCCCTCGTCGGGCAAGGTGCTGACGGGCGGCGTCGACGCCAATGCGCTCCAGCGGCCGAAGCGCTTCTTCGGCGCGGCGCGCAACATCGAGGAGGGCGGCAGCCTCACCATCATCTCGACCTCGCTGATCGACACCGGCAGCCGCATGGACGAGGTGATCTTCGAGGAGTTCAAGGGCACCGGCAACGCCGAGATCGTGCTGGACCGCAAGGTGGCCGACAAGCGCATCTTCCCGGCGATCGACGTGGGCAAATCCGGCACCCGCAAGGAGGAGCTGCTGGTCGAGAAGGGCACGCTCAGCAAGATGTGGGTGCTGCGCCGCATCCTGATGCAGATGGGCACCGTCGACGCAATGGAGTTCCTGCTCGGCAAGATGAAGGATTCGAAGACCAACGAGGATTTCTTCGAGAGCATGAATCAGTAA
PROTEIN sequence
Length: 419
MHLKDLKKKAPAELVQLAEELGVEGASTLRKQDLMFAILKVQAENGDQIMGEGTIEVLPDGFGFLRSAQANYLAGPDDIYVSPNQVRKFGLRTGDTVEGEIRAPKDGERYFALTKLSTVNYEDPDRVRHRVNFDNLTPLYPDERLKMEIEDPTIKDKSGRVLDVVAPIGKGQRCLIVAPPRVGKTIMMQNIARAISINHPEVFLIVLLIDERPEEVTDMQRTVNGEVVSSTFDEPATRHVQVAEMVIEKAKRLVEHKKDVVILLDNITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIISTSLIDTGSRMDEVIFEEFKGTGNAEIVLDRKVADKRIFPAIDVGKSGTRKEELLVEKGTLSKMWVLRRILMQMGTVDAMEFLLGKMKDSKTNEDFFESMNQ*