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SCNpilot_cont_300_bf_scaffold_162_curated

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Displaying items 1-30 of 200 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_162_curated_1
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(92..586)
DNA (495bp) protein (165aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037AD3B4
Sphingomonas taxi strain 30a NODE_14, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26409.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_162_curated_2
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(624..1265)
DNA (642bp) protein (214aa)
cell wall hydrolase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD046
hypothetical protein
Cell wall hydrolase, SleB {ECO:0000313|EMBL:EAT08994.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
SCNpilot_cont_300_bf_scaffold_162_curated_3
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1427..1756)
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B4FC82
Uncharacterized protein {ECO:0000313|EMBL:KHA64977.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_162_curated_4
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1753..2208)
DNA (456bp) protein (152aa)
Uncharacterized 1 domain protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WY79_9SPHN
Thioesterase {ECO:0000313|EMBL:KHA65004.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
thioesterase superfamily protein
SCNpilot_cont_300_bf_scaffold_162_curated_5
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2195..2665)
DNA (471bp) protein (157aa)
PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN; K02806 PTS system, nitrogen regulatory IIA component [EC:2.7.1.69]
nitrogen regulatory protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B3C176
PTS IIA-like nitrogen-regulatory protein PtsN {ECO:0000313|EMBL:GAM01008.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
SCNpilot_cont_300_bf_scaffold_162_curated_6
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2683..3267)
DNA (585bp) protein (195aa)
Ribosomal subunit interface protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WY81_9SPHN
Sphingomonas taxi strain 30a NODE_14, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26443.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
30S ribosomal protein S30P
SCNpilot_cont_300_bf_scaffold_162_curated_7
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3323..4015)
DNA (693bp) protein (231aa)
DNA polymerase III, epsilon subunit n=1 Tax=Sphingomonas sp. S17 RepID=F3WY82_9SPHN
DNA polymerase III subunit epsilon {ECO:0000313|EMBL:AIT07387.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
DNA polymerase III subunit epsilon
SCNpilot_cont_300_bf_scaffold_162_curated_8
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4023..4616)
DNA (594bp) protein (198aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
coaE; dephospho-CoA kinase; K00859 dephospho-CoA kinase [EC:2.7.1.24]
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000360036C
SCNpilot_cont_300_bf_scaffold_162_curated_9
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4613..5425)
DNA (813bp) protein (271aa)
shikimate 5-dehydrogenase; K00014 shikimate dehydrogenase [EC:1.1.1.25]
Shikimate dehydrogenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WG67_9SPHN
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_cont_300_bf_scaffold_162_curated_10
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5422..6012)
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003773785
Maf-like protein SP5_043_00400 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
maf protein; K06287 septum formation protein
SCNpilot_cont_300_bf_scaffold_162_curated_11
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6009..6839)
DNA (831bp) protein (277aa)
Putative pyruvate, phosphate dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921}; Short=PPDK regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.11.32 {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.4.27 {ECO:0000256|HAMAP-Rule:MF_00921};; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
PEP synthetase regulatory protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003725BDE
PEP synthetase regulatory protein
SCNpilot_cont_300_bf_scaffold_162_curated_12
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7144..8160
DNA (1017bp) protein (339aa)
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hemE; uroporphyrinogen decarboxylase (EC:4.1.1.37)
uroporphyrinogen decarboxylase n=1 Tax=Sphingomonas melonis RepID=UPI00037BFDB7
SCNpilot_cont_300_bf_scaffold_162_curated_13
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8185..8643
DNA (459bp) protein (153aa)
membrane protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B58E72
Uncharacterized protein {ECO:0000313|EMBL:GAM01000.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
hypothetical protein; K08973 putative membrane protein
SCNpilot_cont_300_bf_scaffold_162_curated_14
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8807..10063
DNA (1257bp) protein (419aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
transcription termination factor Rho n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B5DCF5
rho; transcription termination factor Rho; K03628 transcription termination factor Rho
SCNpilot_cont_300_bf_scaffold_162_curated_15
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10295..11014
DNA (720bp) protein (240aa)
membrane protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030C1DE8
Membrane protein {ECO:0000313|EMBL:AJP73602.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
integral membrane protein TerC
SCNpilot_cont_300_bf_scaffold_162_curated_16
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11075..11671
DNA (597bp) protein (199aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003689EA9
Outer-membrane lipoprotein carrier protein {ECO:0000256|SAAS:SAAS00088851}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
outer membrane lipoprotein carrier protein LolA
SCNpilot_cont_300_bf_scaffold_162_curated_17
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11852..12901)
DNA (1050bp) protein (350aa)
GTP cyclohydrolase II {ECO:0000256|SAAS:SAAS00129532}; EC=3.5.4.25 {ECO:0000256|SAAS:SAAS00129532};; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
GTP cyclohydrolase II n=1 Tax=Sphingomonas sp. S17 RepID=F3X097_9SPHN
GTP cyclohydrolase II
SCNpilot_cont_300_bf_scaffold_162_curated_18
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12898..13680)
DNA (783bp) protein (261aa)
exodeoxyribonuclease III n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B484D6
Exodeoxyribonuclease III {ECO:0000313|EMBL:AIT07379.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
exodeoxyribonuclease III
SCNpilot_cont_300_bf_scaffold_162_curated_19
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13720..14382)
DNA (663bp) protein (221aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000368683B
Haloacid dehalogenase {ECO:0000313|EMBL:AIT07409.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
putative phosphatase
SCNpilot_cont_300_bf_scaffold_162_curated_20
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14379..15038)
DNA (660bp) protein (220aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037C3419
Alanine racemase {ECO:0000313|EMBL:AJP73616.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
alanine racemase domain-containing protein
SCNpilot_cont_300_bf_scaffold_162_curated_21
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15076..15585
DNA (510bp) protein (170aa)
thiamine monophosphate synthase; K00788 thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
thiamine monophosphate synthase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B3DB39
Thiamine monophosphate synthase {ECO:0000313|EMBL:AJP73615.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_cont_300_bf_scaffold_162_curated_22
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15601..16299)
DNA (699bp) protein (233aa)
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X0A1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHA65009.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_162_curated_23
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16535..16969
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B63012
Uncharacterized protein {ECO:0000313|EMBL:KHA65008.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_162_curated_24
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


17012..19534
DNA (2523bp) protein (841aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
leuS; leucyl-tRNA synthetase (EC:6.1.1.4); K01869 leucyl-tRNA synthetase [EC:6.1.1.4]
leucyl-tRNA synthetase n=1 Tax=Sphingomonas melonis RepID=UPI0003611194
SCNpilot_cont_300_bf_scaffold_162_curated_25
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19531..20034
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026C9C20
Uncharacterized protein {ECO:0000313|EMBL:EZP49214.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein; K03643 LPS-assembly lipoprotein
SCNpilot_cont_300_bf_scaffold_162_curated_26
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20031..21053
DNA (1023bp) protein (341aa)
DNA polymerase III subunit delta (EC:2.7.7.7); K02340 DNA polymerase III subunit delta [EC:2.7.7.7]
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000363CB9A
DNA polymerase III subunit delta {ECO:0000313|EMBL:AIT07402.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_300_bf_scaffold_162_curated_27
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21058..21945)
DNA (888bp) protein (296aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000377B99D
Chromosome partitioning protein ParB {ECO:0000313|EMBL:KHA64990.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
parB-like partition protein
SCNpilot_cont_300_bf_scaffold_162_curated_28
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21942..22724)
DNA (783bp) protein (261aa)
chromosome partitioning protein ParA n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B77F40
Sphingomonas taxi strain 30a NODE_14, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26425.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
parA; chromosome partitioning protein ParA; K03496 chromosome partitioning protein
SCNpilot_cont_300_bf_scaffold_162_curated_29
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22721..23335)
DNA (615bp) protein (205aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.170 {ECO:0000256|HAMAP-Rule:MF_00074};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
gidB; putative S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division; K03501 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
16S rRNA methyltransferase n=1 Tax=Sphingomonas elodea RepID=UPI000263160E
SCNpilot_cont_300_bf_scaffold_162_curated_30
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23332..25053)
DNA (1722bp) protein (574aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037E4191
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG; K03495 tRNA uridine 5-carboxymethylaminomethyl modification enzyme
Displaying items 1-30 of 200 in total

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