ggKbase home page

SCNpilot_expt_500_bf_scaffold_629_curated_2

Organism: scnpilot_dereplicated_Sphingopyxis_1

near complete RP 50 / 55 BSCG 49 / 51 ASCG 10 / 38
Location: comp(597..2189)

Top 3 Functional Annotations

Value Algorithm Source
Putative recombinase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZUV1_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 61.3
  • Coverage: 525.0
  • Bit_score: 621
  • Evalue 1.10e-174
Putative recombinase {ECO:0000313|EMBL:GAD49164.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 61.3
  • Coverage: 525.0
  • Bit_score: 621
  • Evalue 1.50e-174
site-specific recombinase, DNA invertase Pin similarity KEGG
DB: KEGG
  • Identity: 42.7
  • Coverage: 524.0
  • Bit_score: 361
  • Evalue 3.60e-97

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Novosphingobium tardaugens → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1593
ATGCTTCGCCTTGCGGCCACCGACGGCGCCCTTGCGGCCCCTCCCAAGGTCTACAGCTACACCCGCTTCAGCACCCCCGAACAAGCGCAGGGCGACAGCCACCGCCGCCAAACCGAAGCCGCCCGCAAGTGGGCGGAGGCGCGGGGCTTGCACCTCGACGAACGGCTGCGTCTCCACGACCTCGGGGTATCGGCTTACCGAGGCGCCAACGCTGACACCGACAGCGGCCTTGGCGGGTTTCTCCATGCCTGCCGGGAAGGCCTGATTGCTCCCGGCTCATACCTCCTCGTCGAAAGCCTAGATCGCATCTCCCGCATGACCCCGCGCCGCGCTCAGCGCCTCTTGGATGACATTGTGGACGCCAAGGTTACGGTGGTGACGCTTAACGATGGGCAGGAATATGACAGCTACCGGCTCGACAGCGATCCGACCGCGCTCCTCATCGGAATGATGGTGTCGTGGCGCGCGCATGAAGAAAGCAAGACCAAGGGGCGCCGTGTCGCCGCTGCGTGGCAGGAGAAGCGCCGCCGCGTGGCCGCAGGGGAGGCCCAGCACTACACCGCCAAGGCCCCCGCATGGCTCCTCAAGTCCCCTGAAGGCTTCGAGCTACACCCAGAGCGGGCCGCTATCGTCCGCCGCATATACCGCGACACCATCGAAGGCGCCGGGGAGCATGCAATCGCTCAGGCCCTGAACGCGGAGCGGGTGCCGGTGATGGGGCGGGGGAAGATGTGGCACCGTTCCACGGTGTCCAAGATTCTCCGCAACGCCGCCGTCATCGGGACGCTAGTCCCCGGAAGGCTAGACTATGGGACCGGAAAGAAGGTTCGGGTCTATGAGGCGCCGGTAGCGGGCTTCTTCCCCGCCGCCGTGTCGGTCGCCGAATGGACCGCCGTCCGGGCAATCAAAGATGGCAGCATCGCCAGAGCGCGCGGCAAGTCAGCCGGTGCACCTATCCAGAATATGCTTGCCGGACTGGCGCGCTGCCCTGAGTGCGGGGCGGCGATGACGCGGGTGTACAAAGGCAACGCTGCGAAGGCCGGGGCGCCGAAGTTGGTTTGCACCAAGGCCAAGGCCGGGGCTGCGGACCACGGCTATGTGTCGGTGCCGATTGATGCGGTCCATGACGCCATCGCGGCGGGGTGGGGGAAGCTGATCGACAATGTTCCCGCTGGGGATCGCGAACCGAAGCTGGATAGTGACGCGCGGAGCCTTCAGGCGGAGATTGATGGGACGGAGGACCACCTGCGCGAACTCCTCCGCATGCTCGATAACAAGCCCTCGCTTGCGCTGTCGGCCCGCGTTCAAGCAGCCGAGGCGAGTCTGTCGGCACTGAGGGCGGCGCTTCAGGGCGTCGAACAGGCCCGTGCGGTTGCCGATGGTGGGTTGGTTCACTCCCGGCTGGACGCCCTCGTCGCGGCCTTTGAGGTCGAGGAGAATGAGCCGCCGGATGTCGGCAAGATCAACGCCGCGCTTCGGCTCCTCTTCTCGGGCGTCACCGTCGATTATCGGACGGGGTGGCTGCGGTTTGATTGGCGACAGGGTGGCGGGACGGACCTCATCTACGCAATGGCCCCAGTCGAGGTGAATTAG
PROTEIN sequence
Length: 531
MLRLAATDGALAAPPKVYSYTRFSTPEQAQGDSHRRQTEAARKWAEARGLHLDERLRLHDLGVSAYRGANADTDSGLGGFLHACREGLIAPGSYLLVESLDRISRMTPRRAQRLLDDIVDAKVTVVTLNDGQEYDSYRLDSDPTALLIGMMVSWRAHEESKTKGRRVAAAWQEKRRRVAAGEAQHYTAKAPAWLLKSPEGFELHPERAAIVRRIYRDTIEGAGEHAIAQALNAERVPVMGRGKMWHRSTVSKILRNAAVIGTLVPGRLDYGTGKKVRVYEAPVAGFFPAAVSVAEWTAVRAIKDGSIARARGKSAGAPIQNMLAGLARCPECGAAMTRVYKGNAAKAGAPKLVCTKAKAGAADHGYVSVPIDAVHDAIAAGWGKLIDNVPAGDREPKLDSDARSLQAEIDGTEDHLRELLRMLDNKPSLALSARVQAAEASLSALRAALQGVEQARAVADGGLVHSRLDALVAAFEVEENEPPDVGKINAALRLLFSGVTVDYRTGWLRFDWRQGGGTDLIYAMAPVEVN*