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SCNpilot_cont_300_bf_scaffold_463_curated

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Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_463_curated_1
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(375..680)
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QJM3_SPILD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB40069.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_463_curated_2
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(785..1414)
DNA (630bp) protein (210aa)
methyltransferase GidB; K03501 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
16S rRNA methyltransferase n=1 Tax=Spirosoma panaciterrae RepID=UPI000377494F
SCNpilot_cont_300_bf_scaffold_463_curated_3
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(1486..2871)
DNA (1386bp) protein (462aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000361017A
Glycosyl transferase family 2 {ECO:0000313|EMBL:AKD56948.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
family 2 glycosyl transferase
SCNpilot_cont_300_bf_scaffold_463_curated_4
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

2941..3978
DNA (1038bp) protein (346aa)
queuine tRNA-ribosyltransferase (EC:2.4.2.29); K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29]
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
queuine tRNA-ribosyltransferase n=1 Tax=Spirosoma panaciterrae RepID=UPI000365AB7A
SCNpilot_cont_300_bf_scaffold_463_curated_5
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

4120..5166
DNA (1047bp) protein (349aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003669227
Lipopolysaccharide biosynthesis protein {ECO:0000313|EMBL:CCH51607.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
lipopolysaccharide biosynthesis protein
SCNpilot_cont_300_bf_scaffold_463_curated_6
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

5226..6260
DNA (1035bp) protein (345aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037F5391
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB40063.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_463_curated_7
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

6260..7591
DNA (1332bp) protein (444aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036D2DA0
Uncharacterized protein {ECO:0000313|EMBL:AKD56944.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_463_curated_8
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

7654..8676
DNA (1023bp) protein (341aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036AC57E
group 1 glycosyl transferase
Glycosyl transferase group 1 {ECO:0000313|EMBL:ADB40061.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_463_curated_9
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

8673..9797
DNA (1125bp) protein (375aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000376A4D1
group 1 glycosyl transferase
Glycosyl transferase group 1 {ECO:0000313|EMBL:ADB40060.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_463_curated_10
Fibrella aestuarina, Fibrella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

9810..10910
DNA (1101bp) protein (367aa)
UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14)
UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:CCG99603.1}; EC=5.1.3.14 {ECO:0000313|EMBL:CCG99603.1};; TaxID=1166018 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrella.;" source="Fibrella aestuarina BUZ 2.;"
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000372C0F7
SCNpilot_cont_300_bf_scaffold_463_curated_11
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

10907..12556
DNA (1650bp) protein (550aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036B412B
Heparinase {ECO:0000313|EMBL:AKD58684.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
heparinase II/III family protein
SCNpilot_cont_300_bf_scaffold_463_curated_12
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

12553..13758
DNA (1206bp) protein (402aa)
orfL; glycosyl transferase group 1 (EC:2.4.1.-)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000373D128
Glycosyl transferase family 1 {ECO:0000313|EMBL:AKD56940.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
SCNpilot_cont_300_bf_scaffold_463_curated_13
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(13845..14330)
DNA (486bp) protein (162aa)
thioredoxin n=1 Tax=Spirosoma panaciterrae RepID=UPI0003624526
Thioredoxin {ECO:0000313|EMBL:AKD56938.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
thioredoxin
SCNpilot_cont_300_bf_scaffold_463_curated_14
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

14610..15269
DNA (660bp) protein (220aa)
GTP-binding protein YsxC n=1 Tax=Spirosoma panaciterrae RepID=UPI000380F2EE
ribosome biogenesis GTP-binding protein YsxC; K03978 GTP-binding protein
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_463_curated_15
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

15367..15888
DNA (522bp) protein (174aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000365914C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB40051.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_463_curated_16
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(16044..16907)
DNA (864bp) protein (288aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003682A7E
transglutaminase domain-containing protein
Transglutaminase domain protein {ECO:0000313|EMBL:ACT94719.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_cont_300_bf_scaffold_463_curated_17
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(16897..19455)
DNA (2559bp) protein (853aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00035F1EFF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI50698.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
SCNpilot_cont_300_bf_scaffold_463_curated_18
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(19681..21117)
DNA (1437bp) protein (479aa)
pyruvate kinase (EC:2.7.1.40); K00873 pyruvate kinase [EC:2.7.1.40]
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
pyruvate kinase n=1 Tax=Spirosoma panaciterrae RepID=UPI00037CAF9F
SCNpilot_cont_300_bf_scaffold_463_curated_19
RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated, Bacteroidetes, Bacteria

Not on your lists

comp(21224..21622)
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Spirosoma spitsbergense RepID=UPI0003790957
twitching motility protein PilT
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated
SCNpilot_cont_300_bf_scaffold_463_curated_20
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(21619..21852)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GCM0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CCH51644.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
SCNpilot_cont_300_bf_scaffold_463_curated_21
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(21888..24413)
DNA (2526bp) protein (842aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
primosomal protein N'; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-]
primosomal protein N'''' n=1 Tax=Spirosoma panaciterrae RepID=UPI000380C4C9
SCNpilot_cont_300_bf_scaffold_463_curated_22
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

24622..28365
DNA (3744bp) protein (1248aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037230EF
Uncharacterized protein {ECO:0000313|EMBL:AKD56935.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_463_curated_23
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(28477..29340)
DNA (864bp) protein (288aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000366FD7D
Peptidase M12 {ECO:0000313|EMBL:AKD58681.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_463_curated_24
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

29666..30670
DNA (1005bp) protein (335aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9]
thioredoxin reductase n=1 Tax=Spirosoma panaciterrae RepID=UPI000380682C
FAD-dependent pyridine nucleotide-disulphide oxidoreductase {ECO:0000313|EMBL:ADB40047.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_463_curated_25
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(30742..31536)
DNA (795bp) protein (265aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003736E8D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB36702.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_463_curated_26
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

31590..32516
DNA (927bp) protein (309aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036DF01C
xylose isomerase
Xylose isomerase domain protein TIM barrel {ECO:0000313|EMBL:ADB40847.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_463_curated_27
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

32655..33071
DNA (417bp) protein (139aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036729C0
Histidine kinase {ECO:0000313|EMBL:AKD56323.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
response regulator receiver protein
SCNpilot_cont_300_bf_scaffold_463_curated_28
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(33096..34412)
DNA (1317bp) protein (439aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037B2F9C
Glycosyl hydrolase family 109 protein {ECO:0000313|EMBL:CCH52530.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
NADH-dependent dyhydrogenase
SCNpilot_cont_300_bf_scaffold_463_curated_29
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34597..34842)
DNA (246bp) protein (82aa)
hypothetical protein n=1 Tax=Leptolyngbya boryana RepID=UPI00035CB04D
Genome assembly strain_NMP_1 {ECO:0000313|EMBL:CEP66733.1}; TaxID=55779 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="Moorella glycerini.;"
hypothetical protein; K07339 hypothetical protein
SCNpilot_cont_300_bf_scaffold_463_curated_30
Syntrophomonas wolfei, Syntrophomonas, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34924..35154)
DNA (231bp) protein (77aa)
2-oxoisovalerate dehydrogenase E1 subunit beta n=1 Tax=Cytophagales str. B6 RepID=UPI0003B53753
2-oxoisovalerate dehydrogenase, E1 component subunit beta
2-oxoisovalerate dehydrogenase, E1 component beta subunit {ECO:0000313|EMBL:ABI68116.1}; TaxID=335541 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophomonas.;" source="Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen).;"
Displaying items 1-30 of 37 in total

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