ggKbase home page

SCNpilot_cont_300_bf_scaffold_101_curated_36

Organism: scnpilot_dereplicated_Spirosoma_1

near complete RP 53 / 55 MC: 1 BSCG 50 / 51 ASCG 14 / 38 MC: 1
Location: comp(37052..38020)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 96.0
  • Coverage: 322.0
  • Bit_score: 609
  • Evalue 2.10e-171
DNA-directed RNA polymerase subunit alpha; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] similarity KEGG
DB: KEGG
  • Identity: 95.3
  • Coverage: 322.0
  • Bit_score: 607
  • Evalue 3.00e-171
DNA-directed RNA polymerase subunit alpha n=1 Tax=Spirosoma panaciterrae RepID=UPI000360A227 similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 322.0
  • Bit_score: 634
  • Evalue 5.60e-179

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Spirosoma radiotolerans → Spirosoma → Cytophagales → Cytophagia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 969
ATGCCCGACAAAGTCGTAGTGGAGAAAGCTGACGACTTTCACGGGGCGTTTGAATTCAAACCCCTTGAAAAAGGATACGGTGTAACCATCGGCAATGCGCTTCGTCGCATTCTGCTGTCATCGCTGGAAGGATACGCCATTACAAGCGTAAAATTCCCCGGTGTGTTGCATGAGTTTTCTTCAATTGAGGGCGTAGTTGAAGACGTGACCGAAATTATCCTGAACCTGAAAATGGTTCGGTTCAAAAAGATTTCGGACATGGTTGACAACAAAATTACCGTAAACATCAAGAAACAGCCAGTTCTGAAAGCTGGTGATATATCGAAATTCTCGCCATCGTTCGAAGTGCTGAATCCTGAACTGGAAATCTGCCATATCGATGATACGCGGGATTTTGAGATGGAAATTATCGTGGAAAAAGGCCGTGGGTATGTTCCGGCTGACGAACCACGGGCTAATGAGCTGCCATTTGGTCATATCCCAATTGATGCCATTTACACGCCAATCAAAAACGTGAAATATGGTGTTGATAACACACGGGTAGAGCAAAAAACGGACTATGAGCGCCTTCTTTTAGACATTGAAACAGATGGTTCGGTACACCCTGAAATTGCATTGCAGGAAGCCGCCAAGATTCTGATTCAGCACTTCATGCTGTTCTCGGATCAGACCATGACGTTTGAAACGGCTAAGCCAGAAGAAGAAAACGTAGTAGACGAAGAAGTTCTGCATATGCGGAAATTGCTGAAAACCTCGCTGGCCGACCTTGATCTGTCGGTACGTGCTTACAACTGCTTAAAGTCGGCAGATGTACGGACGCTGGGCGATCTGGTTCGGTTAGAAATTTCGGATATGATGAAGTTCCGCAACTTCGGGAAGAAGTCGCTTACGGAGCTGGAGCAACTGGTAGCAGAGAAAAACTTGACATTCGGGATGGATGTCAGCAAATACAGATTAGACGAAGATTAA
PROTEIN sequence
Length: 323
MPDKVVVEKADDFHGAFEFKPLEKGYGVTIGNALRRILLSSLEGYAITSVKFPGVLHEFSSIEGVVEDVTEIILNLKMVRFKKISDMVDNKITVNIKKQPVLKAGDISKFSPSFEVLNPELEICHIDDTRDFEMEIIVEKGRGYVPADEPRANELPFGHIPIDAIYTPIKNVKYGVDNTRVEQKTDYERLLLDIETDGSVHPEIALQEAAKILIQHFMLFSDQTMTFETAKPEEENVVDEEVLHMRKLLKTSLADLDLSVRAYNCLKSADVRTLGDLVRLEISDMMKFRNFGKKSLTELEQLVAEKNLTFGMDVSKYRLDED*