ggKbase home page

SCNpilot_cont_300_bf_scaffold_406_curated_15

Organism: scnpilot_dereplicated_Spirosoma_1

near complete RP 53 / 55 MC: 1 BSCG 50 / 51 ASCG 14 / 38 MC: 1
Location: comp(19573..20184)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KZI4_HALH1 similarity UNIREF
DB: UNIREF100
  • Identity: 40.9
  • Coverage: 176.0
  • Bit_score: 139
  • Evalue 2.70e-30
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 40.9
  • Coverage: 176.0
  • Bit_score: 139
  • Evalue 8.60e-31
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEE49454.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 40.9
  • Coverage: 176.0
  • Bit_score: 139
  • Evalue 3.80e-30

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Haliscomenobacter hydrossis → Haliscomenobacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 612
ATGGGTGTTACACCGCCGACCAACGAACAAGTACTCTGGCTCAGTTTCCAGTCGGGCGATGAAGGGGCTTTTCAGCAACTCTATCAGCTCCATATTCGGCATCTGCTCAACTATGGGTTGCGTCTTTGTGAGTCCGTAGCAACCGTTGAAGACTGCATTCAAGATGTATTTACCGAACTCTGGCACTACCGACAACGGGTTACCCAACCGGCTTCGGTGCGTTTTTATTTGCTGAAGGCACTTCGCAACCGGCTCAAAGCCCAGTACCGCCGGGAGCAACCATTCATATCGGGTTGGGATGATGATCGGGATGAAATAGGTCAAGCGACATTTAGTATCGAGCCGTCTGCCGAACAGCAGCTCATCGCACTGGATATTGATTCCGAGCGGGCAGCGAAAATCCGGCTGGCTATGAATGCCTTATCGCCCCGGCAACGCGAAATTATATACCTCCGCTATTTTAACGACCTATCGTATGAGCAGATCTGTGAGTTGATGAACATTAACTATCAGACCGCCCGCTCACAGATTTATTCGAGTTTGAAACAATTGCGCATGCTTCTGAAAGACAAGGAGTTATCGCTATTATTGCCTTTATTTTTCTTCAATTAA
PROTEIN sequence
Length: 204
MGVTPPTNEQVLWLSFQSGDEGAFQQLYQLHIRHLLNYGLRLCESVATVEDCIQDVFTELWHYRQRVTQPASVRFYLLKALRNRLKAQYRREQPFISGWDDDRDEIGQATFSIEPSAEQQLIALDIDSERAAKIRLAMNALSPRQREIIYLRYFNDLSYEQICELMNINYQTARSQIYSSLKQLRMLLKDKELSLLLPLFFFN*