ggKbase home page

SCNpilot_cont_300_bf_scaffold_406_curated

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_406_curated_1
unknown

Not on your lists

2..109
DNA (108bp) protein (36aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_406_curated_2
Riemerella anatipestifer, Riemerella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

383..1003
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Riemerella anatipestifer RA-CH-1 RepID=J9R530_RIEAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFR34852.1}; TaxID=1228997 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Riemerella.;" source="Riemerella anatipestifer RA-CH-1.;"
SCNpilot_cont_300_bf_scaffold_406_curated_3
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1689..2114
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00035D811C
ethyl tert-butyl ether degradation EthD
Ethyl tert-butyl ether degradation EthD {ECO:0000313|EMBL:ACU62571.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_cont_300_bf_scaffold_406_curated_4
Gramella forsetii, Gramella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

2248..3231
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000360A69E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAL68426.1}; TaxID=411154 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Gramella.;" source="Gramella forsetii (strain KT0803).;"
SCNpilot_cont_300_bf_scaffold_406_curated_5
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

3353..4315
DNA (963bp) protein (321aa)
nucleotidyl transferase; K00963 UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
nucleotidyl transferase n=1 Tax=Spirosoma panaciterrae RepID=UPI00035CB260
Nucleotidyl transferase {ECO:0000313|EMBL:ADB38614.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_406_curated_6
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

4372..7722
DNA (3351bp) protein (1117aa)
UTP--glucose-1-phosphate uridylyltransferase n=1 Tax=Spirosoma panaciterrae RepID=UPI0003759E31
UTP--glucose-1-phosphate uridylyltransferase {ECO:0000313|EMBL:ADB38615.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
UTP--glucose-1-phosphate uridylyltransferase
SCNpilot_cont_300_bf_scaffold_406_curated_7
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

7743..8297
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037CECAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB40448.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_406_curated_8
Mariniradius saccharolyticus, Mariniradius, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(8403..9593)
DNA (1191bp) protein (397aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003629271
D-aminopeptidase {ECO:0000313|EMBL:EMS35297.1}; TaxID=1239962 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Mariniradius.;" source="Mariniradius saccharolyticus AK6.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_406_curated_9

Not on your lists

comp(9788..10690)
DNA (903bp) protein (301aa)
Esterase/lipase-like protein n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EK19_RUNSL
Prolyl oligopeptidase family {ECO:0000313|EMBL:AIA10788.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
esterase/lipase-like protein
SCNpilot_cont_300_bf_scaffold_406_curated_10
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(10897..12243)
DNA (1347bp) protein (449aa)
Oxidoreductase domain protein n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EDF6_RUNSL
oxidoreductase domain-containing protein
Oxidoreductase domain protein {ECO:0000313|EMBL:AEI47833.1}; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
SCNpilot_cont_300_bf_scaffold_406_curated_11
Cyclobacterium marinum, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(12284..13276)
DNA (993bp) protein (331aa)
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI00036A05AE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEL27545.1}; Flags: Precursor;; TaxID=880070 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium marinum (strain ATCC 25205 / DSM 745) (Flectobacillus; marinus).;"
SCNpilot_cont_300_bf_scaffold_406_curated_12
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(13403..14824)
DNA (1422bp) protein (474aa)
carbohydrate-binding protein SusD n=1 Tax=Spirosoma luteum RepID=UPI0003640F87
RagB/SusD domain protein {ECO:0000313|EMBL:CCH54393.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
RagB/SusD domain-containing protein
SCNpilot_cont_300_bf_scaffold_406_curated_13
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14839..18351)
DNA (3513bp) protein (1171aa)
TonB-dependent receptor plug n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CAG4_SPHS2
TonB-dependent receptor plug
TonB-dependent receptor plug {ECO:0000313|EMBL:ADZ80934.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
SCNpilot_cont_300_bf_scaffold_406_curated_14
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(18451..19500)
DNA (1050bp) protein (350aa)
Anti-FecI sigma factor, FecR n=1 Tax=Fibrella aestuarina BUZ 2 RepID=I0KDJ2_9BACT
anti-FecI sigma factor, FecR
Iron dicitrate transport regulator FecR {ECO:0000313|EMBL:AKD54652.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
SCNpilot_cont_300_bf_scaffold_406_curated_15
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19573..20184)
DNA (612bp) protein (204aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KZI4_HALH1
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEE49454.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
SCNpilot_cont_300_bf_scaffold_406_curated_16
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(20774..22612)
DNA (1839bp) protein (613aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_0016
glucosamine/fructose-6-phosphate aminotransferase; K00820 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16]
glutamine amidotransferase n=1 Tax=Spirosoma panaciterrae RepID=UPI00037C71D8
SCNpilot_cont_300_bf_scaffold_406_curated_17
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(22775..23581)
DNA (807bp) protein (269aa)
starch synthase (EC:2.4.1.21); K00703 starch synthase [EC:2.4.1.21]
glycogen synthase n=1 Tax=Spirosoma panaciterrae RepID=UPI000371B14B
Glycogen synthase {ECO:0000313|EMBL:AKD57512.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
SCNpilot_cont_300_bf_scaffold_406_curated_18
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

23716..24555
DNA (840bp) protein (280aa)
Pantothenate synthetase {ECO:0000256|HAMAP-Rule:MF_00158}; Short=PS {ECO:0000256|HAMAP-Rule:MF_00158};; EC=6.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00158};; Pantoate--beta-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00158}; Pantoate-activating enzyme {ECO:0000256|HAMAP-Rule:MF_00158}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
pantoate/beta-alanine ligase (EC:6.3.2.1); K01918 pantoate--beta-alanine ligase [EC:6.3.2.1]
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003699E56
SCNpilot_cont_300_bf_scaffold_406_curated_19
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24561..25712)
DNA (1152bp) protein (384aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003760777
peptidase M28
Peptidase M28 {ECO:0000313|EMBL:AEE50911.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
SCNpilot_cont_300_bf_scaffold_406_curated_20
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(25778..26461)
DNA (684bp) protein (228aa)
D-alanyl-D-alanine dipeptidase {ECO:0000256|HAMAP-Rule:MF_01924, ECO:0000256|PIRNR:PIRNR026671}; Short=D-Ala-D-Ala dipeptidase {ECO:0000256|HAMAP-Rule:MF_01924, ECO:0000256|PIRNR:PIRNR026671};; EC=3.4.13.22 {ECO:0000256|HAMAP-Rule:MF_01924, ECO:0000256|PIRNR:PIRNR026671};; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
peptidase M15D vanX D-ala-D-ala dipeptidase; K08641 D-alanyl-D-alanine dipeptidase [EC:3.4.13.22]
peptidase M15 n=1 Tax=Spirosoma panaciterrae RepID=UPI000374A927
SCNpilot_cont_300_bf_scaffold_406_curated_21
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

26607..27842
DNA (1236bp) protein (412aa)
membrane protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003734BF3
nucleoside recognition protein domain-containing protein
Nucleoside recognition domain protein {ECO:0000313|EMBL:ADB40440.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_406_curated_22
Fibrella aestuarina, Fibrella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

28567..31755
DNA (3189bp) protein (1063aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000380211D
TonB-dependent receptor plug {ECO:0000313|EMBL:CCH00702.1}; TaxID=1166018 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrella.;" source="Fibrella aestuarina BUZ 2.;"
TonB-dependent receptor plug
SCNpilot_cont_300_bf_scaffold_406_curated_23
Fibrella aestuarina, Fibrella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

31774..33252
DNA (1479bp) protein (493aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000379F7BD
RagB/SusD domain protein
RagB/SusD domain protein {ECO:0000313|EMBL:CCH00703.1}; TaxID=1166018 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrella.;" source="Fibrella aestuarina BUZ 2.;"
SCNpilot_cont_300_bf_scaffold_406_curated_24
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

33618..36767
DNA (3150bp) protein (1050aa)
membrane protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003629C96
Membrane protein {ECO:0000313|EMBL:AKD54260.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
TonB-dependent receptor plug
SCNpilot_cont_300_bf_scaffold_406_curated_25
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

36791..38254
DNA (1464bp) protein (488aa)
hypothetical protein, partial n=1 Tax=Spirosoma panaciterrae RepID=UPI00037A1294
Uncharacterized protein {ECO:0000313|EMBL:AKD54259.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_406_curated_26
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

38284..38802
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036AF91E
Uncharacterized protein {ECO:0000313|EMBL:AKD54258.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_406_curated_27
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

38921..40882
DNA (1962bp) protein (654aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003652E7A
peptidase S8/S53 subtilisin kexin sedolisin
Peptidase S8 and S53 subtilisin kexin sedolisin {ECO:0000313|EMBL:ADB36265.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_406_curated_28
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(40903..41616)
DNA (714bp) protein (238aa)
short-chain dehydrogenase n=1 Tax=Spirosoma panaciterrae RepID=UPI00036CE36B
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADB36264.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_406_curated_29
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

41796..42659
DNA (864bp) protein (288aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000372BB46
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB36263.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_406_curated_30
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(42816..43043)
DNA (228bp) protein (76aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003792081
Uncharacterized protein {ECO:0000313|EMBL:AKD56880.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
hypothetical protein
Displaying items 1-30 of 35 in total

View Taxonomy