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SCNpilot_cont_300_bf_scaffold_658_curated

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_658_curated_1
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(94..1809)
DNA (1716bp) protein (572aa)
aminopeptidase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000362C0B6
Aminopeptidase {ECO:0000313|EMBL:AHY60593.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
Peptidase
SCNpilot_cont_300_bf_scaffold_658_curated_2
Xanthomonas fuscans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1869..2525)
DNA (657bp) protein (219aa)
Secreted protein n=1 Tax=Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122 RepID=D4SZG3_9XANT
Secreted protein {ECO:0000313|EMBL:EFF42389.1}; TaxID=427081 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_658_curated_3
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2572..3897
DNA (1326bp) protein (442aa)
peptidase M23 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00037E65F1
peptidase M23
Peptidase M23 {ECO:0000313|EMBL:AEM49665.1}; TaxID=868597 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia JV3.;"
SCNpilot_cont_300_bf_scaffold_658_curated_4
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4012..5415
DNA (1404bp) protein (468aa)
Periplasmic carboxyl-terminal protease {ECO:0000313|EMBL:EKU24321.1}; EC=3.4.21.102 {ECO:0000313|EMBL:EKU24321.1};; TaxID=1195885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens pv. graminis ART-Xtg29.;"
carboxyl-terminal protease; K03797 carboxyl-terminal processing protease [EC:3.4.21.102]
Periplasmic carboxyl-terminal protease n=1 Tax=Xanthomonas translucens pv. graminis ART-Xtg29 RepID=K8ZF37_XANCT
SCNpilot_cont_300_bf_scaffold_658_curated_5
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5568..5891)
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003A0BDA5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEL04952.1}; TaxID=990315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. raphani 756C.;"
SCNpilot_cont_300_bf_scaffold_658_curated_6
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5931..6623)
DNA (693bp) protein (231aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002D50541
Putative Peptidase, S54 (Rhomboid) family {ECO:0000313|EMBL:EZP46503.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
putative rhomboid family transmembrane protein
SCNpilot_cont_300_bf_scaffold_658_curated_7
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6839..8218
DNA (1380bp) protein (460aa)
Membrane protein involved in aromatic hydrocarbon degradation n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WX71_PSEUU
aromatic hydrocarbon degradation membrane protein; K06076 long-chain fatty acid transport protein
Membrane protein involved in aromatic hydrocarbon degradation {ECO:0000313|EMBL:ADV28770.1}; Flags: Precursor;; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
SCNpilot_cont_300_bf_scaffold_658_curated_8
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8343..8948
DNA (606bp) protein (202aa)
Ribosyl nicotinamide transporter, PnuC-like n=1 Tax=Stenotrophomonas maltophilia D457 RepID=I0KIQ3_STEMA
pnuC2; Ribosyl nicotinamide transporter, PnuC-like; K03811 nicotinamide mononucleotide transporter
Nicotinamide mononucleotide transporter {ECO:0000313|EMBL:KDE90727.1}; TaxID=1451188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia M30.;"
SCNpilot_cont_300_bf_scaffold_658_curated_9
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9021..12233)
DNA (3213bp) protein (1071aa)
putA; proline dehydrogenase (EC:1.5.99.8 1.5.1.12); K13821 proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.99.8 1.5.1.12]
pyrroline-5-carboxylate dehydrogenase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003016FAC
Integrase {ECO:0000313|EMBL:AHY60586.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
SCNpilot_cont_300_bf_scaffold_658_curated_10
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12537..13010
DNA (474bp) protein (158aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000375CDC8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCP14361.1}; TaxID=1118157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia RA8.;"
SCNpilot_cont_300_bf_scaffold_658_curated_11
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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13028..13960
DNA (933bp) protein (311aa)
Cytochrome c oxidase subunit 2; EC=1.9.3.1;; TaxID=1333853 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia MF89.;"
cytochrome c oxidase subunit II; K02275 cytochrome c oxidase subunit II [EC:1.9.3.1]
Cytochrome c oxidase subunit 2 n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5KRE5_STEMA
SCNpilot_cont_300_bf_scaffold_658_curated_12
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14025..15635
DNA (1611bp) protein (537aa)
ctaD; cytochrome c oxidase subunit I (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1]
cytochrome oxidase subunit I n=1 Tax=Xanthomonas oryzae RepID=UPI0003170110
Cytochrome oxidase subunit I {ECO:0000313|EMBL:KHS05962.1}; TaxID=317013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. phaseoli.;"
SCNpilot_cont_300_bf_scaffold_658_curated_13
unknown

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15647..15781
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_658_curated_14
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15778..16365
DNA (588bp) protein (196aa)
cysteine ABC transporter substrate-binding protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003672D2B
Cytochrome C oxidase assembly protein {ECO:0000313|EMBL:EZP46492.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
cytochrome C oxidase assembly protein; K02258 cytochrome c oxidase assembly protein subunit 11
SCNpilot_cont_300_bf_scaffold_658_curated_15
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16387..17262
DNA (876bp) protein (292aa)
cytochromeC oxidase subunit III; K02276 cytochrome c oxidase subunit III [EC:1.9.3.1]
MFS transporter n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000379DFD3
MFS transporter {ECO:0000313|EMBL:AHY60582.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
SCNpilot_cont_300_bf_scaffold_658_curated_16
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17344..17562)
DNA (219bp) protein (73aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00031C4C7B
Membrane protein {ECO:0000313|EMBL:AHY60581.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
putative transmembrane protein
SCNpilot_cont_300_bf_scaffold_658_curated_17
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17620..18333
DNA (714bp) protein (238aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002EAA148
Membrane protein {ECO:0000313|EMBL:AHY60580.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_658_curated_18
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18361..18936
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00035F521C
Uncharacterized protein {ECO:0000313|EMBL:AHY60579.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_658_curated_19
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18948..20111
DNA (1164bp) protein (388aa)
cytochrome oxidase assembly protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002FB358F
Cytochrome oxidase assembly protein {ECO:0000313|EMBL:AHY60578.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
cytochrome oxidase assembly; K02259 cytochrome c oxidase assembly protein subunit 15
SCNpilot_cont_300_bf_scaffold_658_curated_20
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20116..21009
DNA (894bp) protein (298aa)
Protoheme IX farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_00154};; Heme B farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; Heme O synthase {ECO:0000256|HAMAP-Rule:MF_00154}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
coxD; protoheme IX farnesyltransferase; K02301 protoheme IX farnesyltransferase [EC:2.5.1.-] rbh
protoheme IX farnesyltransferase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002D87987
SCNpilot_cont_300_bf_scaffold_658_curated_21
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21074..22060)
DNA (987bp) protein (329aa)
Membrane protein n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5KG57_STEMA
Sodium/bile acid symporter family; K14347 solute carrier family 10 (sodium/bile acid cotransporter), member 7
Membrane protein {ECO:0000313|EMBL:EQM82593.1}; TaxID=1333853 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia MF89.;"
SCNpilot_cont_300_bf_scaffold_658_curated_22
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22095..22592)
DNA (498bp) protein (166aa)
hypothetical protein, partial n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00035D4F8B
Uncharacterized protein {ECO:0000313|EMBL:AHY60572.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
beta-lactamase hydrolase-family protein
SCNpilot_cont_300_bf_scaffold_658_curated_23
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22613..24346)
DNA (1734bp) protein (578aa)
dnaG; DNA primase; K02316 DNA primase [EC:2.7.7.-]
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=522373 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain K279a).;"
DNA primase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E11B95
SCNpilot_cont_300_bf_scaffold_658_curated_24
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24404..25282)
DNA (879bp) protein (293aa)
Ribonuclease BN n=1 Tax=Xanthomonas fragariae LMG 25863 RepID=R0E4N3_9XANT
BrkB protein {ECO:0000313|EMBL:AKC86534.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
rbn; multitransmembrane protein
SCNpilot_cont_300_bf_scaffold_658_curated_25
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25380..25826)
DNA (447bp) protein (149aa)
Uncharacterized protein n=10 Tax=Xanthomonas RepID=Q8PFV0_XANAC
Glutamyl-tRNA amidotransferase {ECO:0000313|EMBL:KHD61226.1}; TaxID=317013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. phaseoli.;"
hypothetical protein; K09117 hypothetical protein
SCNpilot_cont_300_bf_scaffold_658_curated_26
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25963..26178)
DNA (216bp) protein (72aa)
rpsU; 30S ribosomal protein S21; K02970 small subunit ribosomal protein S21
30S ribosomal protein S21 id=2574242 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=unknown taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=1451188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia M30.;"
SCNpilot_cont_300_bf_scaffold_658_curated_27
Xanthomonas fuscans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


26378..27403
DNA (1026bp) protein (342aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00195365}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=427082 species="Bacteria; Proteobacteria; Gammapro
gcp; DNA-binding/iron metalloprotein/AP endonuclease; K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57] rbh
tRNA N6-adenosine threonylcarbamoyltransferase n=2 Tax=Xanthomonas fuscans subsp. aurantifolii RepID=D4SWV6_9XANT
SCNpilot_cont_300_bf_scaffold_658_curated_28
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27500..27853
DNA (354bp) protein (118aa)
folB; putative dihydroneopterin aldolase (EC:4.1.2.25); K01633 dihydroneopterin aldolase [EC:4.1.2.25]
Dihydroneopterin aldolase n=1 Tax=Xanthomonas fragariae LMG 25863 RepID=R0E3X3_9XANT
Stenotrophomonas maltophilia strain ZBG7B contig_31, whole genome shotgun sequence {ECO:0000313|EMBL:KIP86364.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
SCNpilot_cont_300_bf_scaffold_658_curated_29
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27922..29190
DNA (1269bp) protein (423aa)
Uncharacterized protein n=3 Tax=Stenotrophomonas maltophilia RepID=J7V5Z2_STEMA
putative mechanosensitive ion channel; K16053 miniconductance mechanosensitive channel
Uncharacterized protein {ECO:0000313|EMBL:EJP77976.1}; TaxID=1183154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia Ab55555.;"
Displaying 29 items

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