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scnpilot_expt_500_bf_sub50_scaffold_9_curated

Search features with annotation key words

Displaying items 1-30 of 158 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_500_bf_sub50_scaffold_9_curated_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1073)
DNA (1071bp) protein (357aa)
conjugal transfer protein TraG n=1 Tax=Thiobacillus denitrificans RepID=UPI00035C7ECF
traG1; conjugal transfer coupling protein TraG; K03205 type IV secretion system protein VirD4
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_expt_500_bf_sub50_scaffold_9_curated_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1364..1606)
DNA (243bp) protein (81aa)
Lipoprotein n=1 Tax=mine drainage metagenome RepID=T1CDB9_9ZZZZ
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_expt_500_bf_sub50_scaffold_9_curated_3
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1648..2553)
DNA (906bp) protein (302aa)
Transcriptional regulator, LysR family n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VUZ6_POLNA
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABM39474.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
scnpilot_expt_500_bf_sub50_scaffold_9_curated_4
Burkholderia sp. lig30, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2819..4339)
DNA (1521bp) protein (507aa)
L-threonine dehydratase {ECO:0000256|RuleBase:RU362012}; EC=4.3.1.19 {ECO:0000256|RuleBase:RU362012};; Threonine deaminase {ECO:0000256|RuleBase:RU362012}; TaxID=1192124 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. lig30.;"
ilvA; threonine ammonia-lyase, biosynthetic (EC:4.3.1.19)
Threonine ammonia-lyase, biosynthetic n=15 Tax=Burkholderia pseudomallei RepID=A8E9J0_BURPE
scnpilot_expt_500_bf_sub50_scaffold_9_curated_5
Burkholderia sp. MSHR3999, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4461..6122)
DNA (1662bp) protein (554aa)
tannase n=1 Tax=Burkholderia ubonensis RepID=UPI00016A5003
KY49.ctg7180000000025_quiver, whole genome shotgun sequence {ECO:0000313|EMBL:KIP14361.1}; TaxID=1542965 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MSHR3999.;"
tannase
scnpilot_expt_500_bf_sub50_scaffold_9_curated_6
Burkholderia sp. MSHR3999, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6438..8258)
DNA (1821bp) protein (607aa)
carbamoyltransferase; K00612 carbamoyltransferase [EC:2.1.3.-]
hypothetical protein n=1 Tax=Burkholderia ubonensis RepID=UPI00016A5004
KY49.ctg7180000000025_quiver, whole genome shotgun sequence {ECO:0000313|EMBL:KIP13584.1}; TaxID=1542965 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MSHR3999.;"
scnpilot_expt_500_bf_sub50_scaffold_9_curated_7
Burkholderia sp. MSHR3999, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8251..10380)
DNA (2130bp) protein (710aa)
hypothetical protein n=1 Tax=Burkholderia ubonensis RepID=UPI00016A5005
KY49.ctg7180000000025_quiver, whole genome shotgun sequence {ECO:0000313|EMBL:KIP14750.1}; TaxID=1542965 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MSHR3999.;"
hypothetical protein
scnpilot_expt_500_bf_sub50_scaffold_9_curated_8
Burkholderia ubonensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10417..11898)
DNA (1482bp) protein (494aa)
MFS transporter n=1 Tax=Burkholderia ubonensis RepID=UPI00016A5006
Sugar (And other) transporter family protein {ECO:0000313|EMBL:AJX13682.1}; TaxID=1249668 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia ubonensis MSMB22.;"
major facilitator superfamily protein; K08166 MFS transporter, DHA2 family, methylenomycin A resistance protein
scnpilot_expt_500_bf_sub50_scaffold_9_curated_9
Burkholderia ubonensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12067..13074)
DNA (1008bp) protein (336aa)
hypothetical protein n=1 Tax=Burkholderia ubonensis RepID=UPI00016A5008
Putative iopA {ECO:0000313|EMBL:AJX12147.1}; TaxID=1249668 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia ubonensis MSMB22.;"
Inducer of phenazine A
scnpilot_expt_500_bf_sub50_scaffold_9_curated_10
Burkholderia ubonensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13254..14189)
DNA (936bp) protein (312aa)
hypothetical protein n=1 Tax=Burkholderia ubonensis RepID=UPI00016A5009
Phytanoyl-CoA dioxygenase family protein {ECO:0000313|EMBL:AJX13071.1}; TaxID=1249668 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia ubonensis MSMB22.;"
hypothetical protein
scnpilot_expt_500_bf_sub50_scaffold_9_curated_11
Burkholderia ubonensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14371..15786
DNA (1416bp) protein (472aa)
GntR family transcriptional regulator n=1 Tax=Burkholderia ubonensis RepID=UPI00016A500B
Aminotransferase class I and II family protein {ECO:0000313|EMBL:AJX12014.1}; TaxID=1249668 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia ubonensis MSMB22.;"
transcriptional regulator
scnpilot_expt_500_bf_sub50_scaffold_9_curated_12
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16281..18239)
DNA (1959bp) protein (653aa)
Type IV secretory pathway, VirD2 components (Relaxase) n=1 Tax=Ralstonia solanacearum FQY_4 RepID=M4UBN3_RALSL
Type IV secretory pathway, VirD2 components (Relaxase) {ECO:0000313|EMBL:AGH83629.1}; TaxID=1262456 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum FQY_4.;"
Type IV secretory pathway, VirD2 components (relaxase)
scnpilot_expt_500_bf_sub50_scaffold_9_curated_13
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18559..19083)
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003743BE1
Peptidase {ECO:0000313|EMBL:AJP47689.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
putative conjugal transfer TRAF transmembrane protein
scnpilot_expt_500_bf_sub50_scaffold_9_curated_14
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19080..19613)
DNA (534bp) protein (178aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037C0AB2
Transposase {ECO:0000313|EMBL:AJP47690.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
hypothetical protein
scnpilot_expt_500_bf_sub50_scaffold_9_curated_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19610..19855)
DNA (246bp) protein (82aa)
parB partition protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037E0639
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_expt_500_bf_sub50_scaffold_9_curated_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19852..20490)
DNA (639bp) protein (213aa)
ParA n=1 Tax=Thiobacillus denitrificans RepID=UPI00036BC195
cobyrinic acid a,c-diamide synthase; K03496 chromosome partitioning protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_expt_500_bf_sub50_scaffold_9_curated_17
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20696..21589)
DNA (894bp) protein (298aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D8D51
putative replication initiator and transcription repressor protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_expt_500_bf_sub50_scaffold_9_curated_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21611..21910)
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003680820
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_expt_500_bf_sub50_scaffold_9_curated_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22018..22791)
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035F317D
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_expt_500_bf_sub50_scaffold_9_curated_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23004..23351)
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036B9263
putative lipoprotein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_expt_500_bf_sub50_scaffold_9_curated_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23692..23943
DNA (252bp) protein (84aa)
Transcription regulator (Helix turn helix motif) XRE family n=1 Tax=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) RepID=Q1LNZ2_RALME
transcription regulator (helix turn helix motif) XRE family
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_expt_500_bf_sub50_scaffold_9_curated_22
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23986..24333)
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003645152
Transposase {ECO:0000313|EMBL:AJP47696.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
hypothetical protein
scnpilot_expt_500_bf_sub50_scaffold_9_curated_23
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24546..25103)
DNA (558bp) protein (186aa)
Thiol:disulfide interchange protein DsbG n=2 Tax=Acidithiobacillus caldus RepID=F9ZS47_ACICS
Thiol:disulfide interchange protein DsbG; K03805 thiol:disulfide interchange protein DsbG
Tax=RBG_16_Betaproteobacteria_66_20_curated
scnpilot_expt_500_bf_sub50_scaffold_9_curated_24
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25103..25798)
DNA (696bp) protein (232aa)
Putative cytochrome c biogenesis protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VHX3_9GAMM
Cytochrome C biogenesis transmembrane region family protein {ECO:0000313|EMBL:AJZ56257.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
putative Cytochrome c biogenesis protein
scnpilot_expt_500_bf_sub50_scaffold_9_curated_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25824..26084)
DNA (261bp) protein (87aa)
Thioredoxin/glutaredoxin id=1311325 bin=GWE1_T_denit_62_9 species=Acidithiobacillus caldus genus=Acidithiobacillus taxon_order=Acidithiobacillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
thioredoxin/glutaredoxin
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_expt_500_bf_sub50_scaffold_9_curated_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26077..26508)
DNA (432bp) protein (144aa)
MerR family transcriptional regulator id=1311326 bin=GWE1_T_denit_62_9 species=Rhodanobacter sp. 115 genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
MerR family transcriptional regulator
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_expt_500_bf_sub50_scaffold_9_curated_27
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26699..26935
DNA (237bp) protein (79aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI000360D4A0
copper chaperone
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
scnpilot_expt_500_bf_sub50_scaffold_9_curated_28
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26958..29468
DNA (2511bp) protein (837aa)
Heavy metal translocating P-type ATPase n=1 Tax=Oceanibaculum indicum P24 RepID=K2ID92_9PROT
heavy metal translocating P-type ATPase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
scnpilot_expt_500_bf_sub50_scaffold_9_curated_29
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29634..30041)
DNA (408bp) protein (136aa)
Hg(II)-responsive transcriptional regulator n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TXC1_ALIDB
MerR family transcriptional regulator {ECO:0000313|EMBL:AJP47308.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
hg(ii)-responsive transcriptional regulator; K08365 MerR family transcriptional regulator, mercuric resistance operon regulatory protein
scnpilot_expt_500_bf_sub50_scaffold_9_curated_30
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30114..30467
DNA (354bp) protein (118aa)
Putative mercuric transport protein id=1311319 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
putative mercuric transport protein; K08363 mercuric ion transport protein
Tax=GWE1_Thiobacillus_62_9_curated
Displaying items 1-30 of 158 in total

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