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scnpilot_expt_500_bf_sub50_scaffold_7_curated

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Displaying items 1-30 of 374 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_500_bf_sub50_scaffold_7_curated_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..844)
DNA (843bp) protein (281aa)
hypothetical protein, partial n=1 Tax=Thiobacillus thioparus RepID=UPI0003736D19
methyl-accepting chemotaxis sensory transducer
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_500_bf_sub50_scaffold_7_curated_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(893..1396)
DNA (504bp) protein (168aa)
purine-binding chemotaxis protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035D5A8E
CheW protein; K03408 purine-binding chemotaxis protein CheW
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_500_bf_sub50_scaffold_7_curated_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1421..3499)
DNA (2079bp) protein (693aa)
signal transduction histidine kinase CheA-like protein; K03407 two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
chemotaxis protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037B6818
scnpilot_expt_500_bf_sub50_scaffold_7_curated_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3545..3907)
DNA (363bp) protein (121aa)
Fis family transcriptional regulator n=1 Tax=Thiobacillus thioparus RepID=UPI0003610FC0
response regulator receiver domain-containing protein; K03413 two-component system, chemotaxis family, response regulator CheY
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_500_bf_sub50_scaffold_7_curated_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3962..4522)
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036D24FD
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_expt_500_bf_sub50_scaffold_7_curated_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4531..5430)
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036CDAC2
flgL; flagellar hook-associated protein FlgL; K02397 flagellar hook-associated protein 3 FlgL
Flagellin, flagellar hook-associated protein 3 FlgL {ECO:0000313|EMBL:AAZ97580.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_expt_500_bf_sub50_scaffold_7_curated_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5436..7343)
DNA (1908bp) protein (636aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003806CDC
flgK; flagellar hook-associated protein FlgK; K02396 flagellar hook-associated protein 1 FlgK
Flagellar hook-associated protein {ECO:0000313|EMBL:AAZ97581.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_expt_500_bf_sub50_scaffold_7_curated_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7424..8374)
DNA (951bp) protein (317aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003798E2F
mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; K02395 flagellar protein FlgJ
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_500_bf_sub50_scaffold_7_curated_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8375..9472)
DNA (1098bp) protein (366aa)
flagellar P-ring protein FlgI n=1 Tax=Thiobacillus thioparus RepID=UPI00037F9873
flgI; flagellar basal body P-ring protein; K02394 flagellar P-ring protein precursor FlgI
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_500_bf_sub50_scaffold_7_curated_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9485..10153)
DNA (669bp) protein (223aa)
flagellar L-ring protein FlgH n=1 Tax=Thiobacillus thioparus RepID=UPI00038187EA
flagellar L-ring protein FlgH; K02393 flagellar L-ring protein precursor FlgH
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_expt_500_bf_sub50_scaffold_7_curated_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10162..10944)
DNA (783bp) protein (261aa)
flagellar basal body rod protein FlgG n=1 Tax=Thiobacillus thioparus RepID=UPI000377B500
flagellar basal body rod protein FlgG; K02392 flagellar basal-body rod protein FlgG
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_500_bf_sub50_scaffold_7_curated_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10970..11710)
DNA (741bp) protein (247aa)
flagellar basal body rod protein FlgF n=1 Tax=Thiobacillus thioparus RepID=UPI00035C1362
flgF; flagellar basal body rod protein FlgF; K02391 flagellar basal-body rod protein FlgF
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_500_bf_sub50_scaffold_7_curated_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11736..12962)
DNA (1227bp) protein (409aa)
flagellar hook protein FlgE n=1 Tax=Thiobacillus thioparus RepID=UPI0003768699
flgE; flagellar hook protein FlgE; K02390 flagellar hook protein FlgE
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_expt_500_bf_sub50_scaffold_7_curated_14
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13019..13684)
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036BBA3E
flgD; flagellar basal body rod modification protein; K02389 flagellar basal-body rod modification protein FlgD
Flagellar basal-body rod modification protein FlgD {ECO:0000313|EMBL:AAZ97588.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_expt_500_bf_sub50_scaffold_7_curated_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13710..14114)
DNA (405bp) protein (135aa)
flagellar basal body rod protein FlgC n=1 Tax=Thiobacillus thioparus RepID=UPI000380CFBC
flagellar basal-body rod protein FlgC; K02388 flagellar basal-body rod protein FlgC
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_500_bf_sub50_scaffold_7_curated_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14127..14534)
DNA (408bp) protein (136aa)
flagellar biosynthesis protein FlgB n=1 Tax=Thiobacillus thioparus RepID=UPI00035DCDC6
flagellar basal-body rod protein FlgB; K02387 flagellar basal-body rod protein FlgB
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_500_bf_sub50_scaffold_7_curated_17
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14706..15422
DNA (717bp) protein (239aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000368DD23
flgA; flagellar basal body P-ring biosynthesis protein FlgA; K02386 flagella basal body P-ring formation protein FlgA
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_500_bf_sub50_scaffold_7_curated_18
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15521..15817
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000361F3AE
putative anti-sigma-28 factor, FlgM; K02398 negative regulator of flagellin synthesis FlgM
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_500_bf_sub50_scaffold_7_curated_19
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15804..16292
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036260D3
putative flagella synthesis protein FlgN; K02399 flagella synthesis protein FlgN
Putative flagella synthesis protein FlgN {ECO:0000313|EMBL:AAZ97593.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_expt_500_bf_sub50_scaffold_7_curated_20
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16309..18138)
DNA (1830bp) protein (610aa)
mnmC, trmC, yfcK; 5-methylaminomethyl-2-thiouridine methyltransferase; K15461 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC {ECO:0000255|HAMAP-Rule:MF_01102}; Short=tRNA mnm(5)s(2)U biosynthesis bifunctional protein {ECO:0000255|HAMAP-Rule:MF_01102};; Includes:; tRNA (mnm(5)s(2)U34)-methyltransferase {ECO:0000255|HAMAP-Rule:MF_01102}; EC=2.1.1.61 {ECO:0000255|HAMAP-Rule:MF_01102};; Includes:; FAD-dependent cmnm(5)s(2)U34 oxidoreductase {ECO:0000255|HAMAP-Rule:MF_01102}; EC=1.5.-.- {ECO:0000255|HAMAP-Rule:MF_01102};; TaxID=292415 species="Bacteria; Prot
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003764590
scnpilot_expt_500_bf_sub50_scaffold_7_curated_21
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18183..19337
DNA (1155bp) protein (385aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000360E6B1
secretion protein HlyD; K02005 HlyD family secretion protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_500_bf_sub50_scaffold_7_curated_22
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19334..20005
DNA (672bp) protein (224aa)
ABC transporter n=1 Tax=Thiobacillus thioparus RepID=UPI00035E0465
ABC transporter-like protein; K02003 putative ABC transport system ATP-binding protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_500_bf_sub50_scaffold_7_curated_23
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20247..21449
DNA (1203bp) protein (401aa)
peptide ABC transporter permease n=1 Tax=Thiobacillus thioparus RepID=UPI00036B9511
hypothetical protein; K02004 putative ABC transport system permease protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_500_bf_sub50_scaffold_7_curated_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21446..22645
DNA (1200bp) protein (400aa)
peptide ABC transporter permease n=1 Tax=Thiobacillus thioparus RepID=UPI0003623CEB
hypothetical protein; K02004 putative ABC transport system permease protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_expt_500_bf_sub50_scaffold_7_curated_25
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22877..23299
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003688540
putative periplasmic protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_500_bf_sub50_scaffold_7_curated_26
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23352..23897)
DNA (546bp) protein (182aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035FA708
flavin reductase-like protein
Flavin reductase-like protein {ECO:0000313|EMBL:AAZ97596.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_expt_500_bf_sub50_scaffold_7_curated_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24104..24424)
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000381CA9C
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_500_bf_sub50_scaffold_7_curated_28
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24559..25725
DNA (1167bp) protein (389aa)
methylated-DNA--protein-cysteine methyltransferase; K10778 AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] id=12494662 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
ada; bifunctional DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase; K10778 AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_500_bf_sub50_scaffold_7_curated_29
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25722..26120
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036824FC
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_expt_500_bf_sub50_scaffold_7_curated_30
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26199..27110)
DNA (912bp) protein (304aa)
heterodisulfide reductase, B subunit (EC:1.8.98.1); K03389 heterodisulfide reductase subunit B [EC:1.8.98.1]
heterodisulfide reductase n=1 Tax=Thiobacillus thioparus RepID=UPI000370E3C9
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Displaying items 1-30 of 374 in total

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