ggKbase home page

scnpilot_p_inoc_sub60_scaffold_16_curated

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_sub60_scaffold_16_curated_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..127
DNA (126bp) protein (42aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000360BEBF
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_16_curated_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

131..541
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000367604D
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_p_inoc_sub60_scaffold_16_curated_3
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(596..1615)
DNA (1020bp) protein (340aa)
fructose-bisphosphate aldolase (EC:4.1.2.13); K01623 fructose-bisphosphate aldolase, class I [EC:4.1.2.13]
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003600532
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_p_inoc_sub60_scaffold_16_curated_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1749..2195
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000361851F
sufA; iron sulfur cluster assemblytranscriptional regulator SufA
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_p_inoc_sub60_scaffold_16_curated_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2192..3676
DNA (1485bp) protein (495aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037FB1C2
sufB; Protein sufB
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_p_inoc_sub60_scaffold_16_curated_6
Pseudogulbenkiania sp. NH8B, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3694..4458
DNA (765bp) protein (255aa)
transporter n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D45B1
sufC; FeS assembly ATPase SufC; K09013 Fe-S cluster assembly ATP-binding protein
FeS assembly ATPase SufC {ECO:0000313|EMBL:BAK76995.1}; TaxID=748280 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseudogulbenkiania sp. (strain NH8B).;"
scnpilot_p_inoc_sub60_scaffold_16_curated_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4455..5720
DNA (1266bp) protein (422aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000363A743
sufD; iron sulfur cluster assembly protein SufD; K09015 Fe-S cluster assembly protein SufD
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_p_inoc_sub60_scaffold_16_curated_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5717..6211
DNA (495bp) protein (165aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000378D191
suf system fes assembly protein, nifu family; K04488 nitrogen fixation protein NifU and related proteins
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_p_inoc_sub60_scaffold_16_curated_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6208..6552
DNA (345bp) protein (115aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D0B24
PadD-like protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_p_inoc_sub60_scaffold_16_curated_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6552..6872
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035CE7DF
bphF; Biphenyl dioxygenase system ferredoxin subunit; K05710 dioxygenase ferredoxin subunit
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_p_inoc_sub60_scaffold_16_curated_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6906..7139)
DNA (234bp) protein (78aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000381AB18
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_p_inoc_sub60_scaffold_16_curated_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7392..7967)
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037AAE23
membrane-bound hydrogenase component HupE; K03192 urease accessory protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_p_inoc_sub60_scaffold_16_curated_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7994..9757)
DNA (1764bp) protein (588aa)
Ni-Fe hydrogenase large chain (EC:1.12.99.6); K06281 hydrogenase large subunit [EC:1.12.99.6]
hydrogenase 2 large subunit n=1 Tax=Thiobacillus denitrificans RepID=UPI0003686DD6
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_p_inoc_sub60_scaffold_16_curated_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9761..11038)
DNA (1278bp) protein (426aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037E5E0F
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_16_curated_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11035..11694)
DNA (660bp) protein (220aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D3E90
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_16_curated_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11696..12775)
DNA (1080bp) protein (360aa)
Ni-Fe hydrogenase, small subunit (EC:1.12.99.6); K06282 hydrogenase small subunit [EC:1.12.99.6]
Ni/Fe hydrogenase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003725572
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_p_inoc_sub60_scaffold_16_curated_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12845..13261)
DNA (417bp) protein (139aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036EDA63
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_16_curated_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13251..13724)
DNA (474bp) protein (158aa)
peptidase M52, hydrogen uptake protein; K03605 hydrogenase 1 maturation protease [EC:3.4.24.-]
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035FF2DD
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_16_curated_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13877..14107
DNA (231bp) protein (77aa)
hydrogenase assembly protein HypC n=1 Tax=Thiobacillus denitrificans RepID=UPI0003697EE7
hydrogenase expression/formation protein HupF/HypC; K04653 hydrogenase expression/formation protein HypC
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_p_inoc_sub60_scaffold_16_curated_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14100..14468
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036B3330
hydrogenase expression/formation protein HypA; K04651 hydrogenase nickel incorporation protein HypA/HybF
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_p_inoc_sub60_scaffold_16_curated_21
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14479..15180
DNA (702bp) protein (234aa)
narH; nitrate reductase 1, Fe-S (beta) subunit (EC:1.7.99.4); K00371 nitrate reductase 1, beta subunit [EC:1.7.99.4]
nitrate reductase A subunit beta n=1 Tax=Thiobacillus denitrificans RepID=UPI0003686CB1
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_p_inoc_sub60_scaffold_16_curated_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15193..15861
DNA (669bp) protein (223aa)
narJ; respiratory nitrate reductase subunit delta (EC:1.7.99.4); K00373 nitrate reductase 1, delta subunit
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000364982B
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_16_curated_23
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15880..16563
DNA (684bp) protein (228aa)
respiratory nitrate reductase, gamma subunit (EC:1.7.99.4); K00374 nitrate reductase 1, gamma subunit [EC:1.7.99.4]
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000360136B
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_p_inoc_sub60_scaffold_16_curated_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16598..18142
DNA (1545bp) protein (515aa)
sulfide-quinone reductase (EC:1.-.-.-); K00540 [EC:1.-.-.-]
FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D5230
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_16_curated_25
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18200..18520
DNA (321bp) protein (107aa)
sulfite reductase subunit gamma n=1 Tax=Thiobacillus denitrificans RepID=UPI00036487F8
putative sulfite reductase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_p_inoc_sub60_scaffold_16_curated_26
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18628..19830
DNA (1203bp) protein (401aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036E3514
hypothetical protein; K07234 uncharacterized protein involved in response to NO
Uncharacterized protein {ECO:0000313|EMBL:AAZ97362.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_p_inoc_sub60_scaffold_16_curated_27
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19843..22578)
DNA (2736bp) protein (912aa)
cation-transporting P-type ATPase; K01552 [EC:3.6.3.-]
Putative cation-transporting P-type ATPase n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P8W4_AROAE
Putative cation-transporting P-type ATPase {ECO:0000313|EMBL:CAI06245.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
scnpilot_p_inoc_sub60_scaffold_16_curated_28
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22884..24098
DNA (1215bp) protein (405aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000364FFC1
signal transduction protein containing a membrane domain an EAL and a GGDEF domain
Tax=RBG_16_Betaproteobacteria_58_11_curated
scnpilot_p_inoc_sub60_scaffold_16_curated_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24102..25235
DNA (1134bp) protein (378aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000364FFC1
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_16_curated_30
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25256..26221
DNA (966bp) protein (322aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000378EA80
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Displaying items 1-30 of 32 in total

View Taxonomy