ggKbase home page

scnpilot_p_inoc_sub60_scaffold_75_curated

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_sub60_scaffold_75_curated_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..306)
DNA (306bp) protein (102aa)
molybdopterin molybdochelatase; K03750 molybdopterin molybdotransferase [EC:2.10.1.1]
molybdenum cofactor biosynthesis protein MoaA n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D8A50
Molybdopterin binding domain {ECO:0000313|EMBL:AAZ96978.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_p_inoc_sub60_scaffold_75_curated_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(281..781)
DNA (501bp) protein (167aa)
molybdopterin-guanine dinucleotide biosynthesis protein B n=1 Tax=Thiobacillus denitrificans RepID=UPI00037F9105
molybdopterin-guanine dinucleotide biosynthesis MobB; K03753 molybdopterin-guanine dinucleotide biosynthesis protein B
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_75_curated_3
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

851..1834
DNA (984bp) protein (328aa)
molybdenum cofactor biosynthesis protein MoaA n=1 Tax=Thiobacillus denitrificans RepID=UPI000375A73F
GTP cyclohydrolase subunit MoaA; K03639 molybdenum cofactor biosynthesis protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_p_inoc_sub60_scaffold_75_curated_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1844..3001)
DNA (1158bp) protein (386aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003767800
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_p_inoc_sub60_scaffold_75_curated_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3068..4138
DNA (1071bp) protein (357aa)
selenophosphate synthetase (EC:2.7.9.3); K01008 selenide, water dikinase [EC:2.7.9.3]
Selenide, water dikinase {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883}; EC=2.7.9.3 {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883};; Selenium donor protein {ECO:0000256|HAMAP-Rule:MF_00625}; Selenophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00625}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
segregation protein A n=1 Tax=Thiobacillus denitrificans RepID=UPI00037931D9
scnpilot_p_inoc_sub60_scaffold_75_curated_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4139..5080
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036A3E06
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_p_inoc_sub60_scaffold_75_curated_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5190..6656
DNA (1467bp) protein (489aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000379F8DF
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_p_inoc_sub60_scaffold_75_curated_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6653..7375
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036632FB
putative lipoprotein
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_75_curated_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7375..8058
DNA (684bp) protein (228aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035DAC73
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_p_inoc_sub60_scaffold_75_curated_10
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8110..8694)
DNA (585bp) protein (195aa)
superoxide dismutase, Fe (EC:1.15.1.1); K04564 superoxide dismutase, Fe-Mn family [EC:1.15.1.1]
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
superoxide dismutase n=1 Tax=Thiobacillus denitrificans RepID=UPI000367B4B7
scnpilot_p_inoc_sub60_scaffold_75_curated_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8954..9307)
DNA (354bp) protein (118aa)
transcriptional regulator n=1 Tax=Thiobacillus denitrificans RepID=UPI00037C1BF7
MerR family transcriptional regulator
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_p_inoc_sub60_scaffold_75_curated_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9285..9596)
DNA (312bp) protein (104aa)
ihfA; integration host factor subunit alpha; K04764 integration host factor subunit alpha id=12495538 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
ihfA; integration host factor subunit alpha; K04764 integration host factor subunit alpha
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_p_inoc_sub60_scaffold_75_curated_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9633..11978)
DNA (2346bp) protein (782aa)
phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20); K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
phenylalanyl-tRNA synthetase subunit beta n=1 Tax=Thiobacillus denitrificans RepID=UPI0003623CF9
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_p_inoc_sub60_scaffold_75_curated_14
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11995..13014)
DNA (1020bp) protein (340aa)
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20); K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
phenylalanyl-tRNA synthetase subunit alpha n=1 Tax=Thiobacillus denitrificans RepID=UPI00038279B7
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_p_inoc_sub60_scaffold_75_curated_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13084..13443)
DNA (360bp) protein (120aa)
50S ribosomal protein L20 n=1 Tax=Thiobacillus denitrificans RepID=UPI00036C509D
rplT; 50S ribosomal protein L20; K02887 large subunit ribosomal protein L20
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_p_inoc_sub60_scaffold_75_curated_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13456..13653)
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=2 Tax=Thiobacillus RepID=RL35_THIDA
50S ribosomal protein L35P; K02916 large subunit ribosomal protein L35
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_p_inoc_sub60_scaffold_75_curated_17
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13810..14274)
DNA (465bp) protein (155aa)
translation initiation factor IF-3 n=1 Tax=Thiobacillus thioparus RepID=UPI00036C8DDC
translation initiation factor 3; K02520 translation initiation factor IF-3
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_p_inoc_sub60_scaffold_75_curated_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14457..16364)
DNA (1908bp) protein (636aa)
Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase (EC:3.1.1.- 6.1.1.3); K01868 threonyl-tRNA synthetase [EC:6.1.1.3]
threonyl-tRNA synthetase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003775998
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_p_inoc_sub60_scaffold_75_curated_19
unknown

Not on your lists

comp(16771..16950)
DNA (180bp) protein (60aa)

This feature has no annotations

scnpilot_p_inoc_sub60_scaffold_75_curated_20
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16955..19843
DNA (2889bp) protein (963aa)
phaA; monovalent cation/H+ antiporter subunit A; K05559 multicomponent K+:H+ antiporter subunit A id=12495545 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
pH adaptation potassium efflux protein {ECO:0000313|EMBL:CAI06412.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
phaA; monovalent cation/H+ antiporter subunit A; K05559 multicomponent K+:H+ antiporter subunit A
scnpilot_p_inoc_sub60_scaffold_75_curated_21
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19843..20190
DNA (348bp) protein (116aa)
phaC; monovalent cation/H+ antiporter subunit C; K05560 multicomponent K+:H+ antiporter subunit C id=12495546 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
phaC; monovalent cation/H+ antiporter subunit C; K05560 multicomponent K+:H+ antiporter subunit C
pH adaptation potassium efflux protein {ECO:0000313|EMBL:CAI06411.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
scnpilot_p_inoc_sub60_scaffold_75_curated_22
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20239..21858
DNA (1620bp) protein (540aa)
phaD; monovalent cation/H+ antiporter subunit D; K05561 multicomponent K+:H+ antiporter subunit D id=12495547 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
phaD; monovalent cation/H+ antiporter subunit D; K05561 multicomponent K+:H+ antiporter subunit D
pH adaptation potassium efflux protein {ECO:0000313|EMBL:CAI06410.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
Displaying 22 items

View Taxonomy