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SCNpilot_expt_1000_bf_scaffold_1666_curated

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1666_curated_1
GWA2_RIF03_38_11_curated, RIF3, Bacteria

Not on your lists

comp(2..82)
DNA (81bp) protein (27aa)
Uncharacterized protein n=1 Tax=Thiorhodovibrio sp. 970 RepID=H8Z8B1_9GAMM
hypothetical protein
Tax=GWA2_RIF03_38_11_curated
SCNpilot_expt_1000_bf_scaffold_1666_curated_2
unknown

Not on your lists

88..330
DNA (243bp) protein (81aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1666_curated_3
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

305..574
DNA (270bp) protein (90aa)
Putative uncharacterized protein n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CUM8_SIDLE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADE12415.1}; TaxID=580332 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;" source="Sideroxydans lithotrophicus (strain ES-1).;"
SCNpilot_expt_1000_bf_scaffold_1666_curated_4
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

611..826
DNA (216bp) protein (72aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SHG0_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97926.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_1666_curated_5
BJP_08E140C01_Dechloromonas_61_78, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1175..1927
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037C10F2
hypothetical protein
Tax=BJP_08E140C01_Dechloromonas_61_78
SCNpilot_expt_1000_bf_scaffold_1666_curated_6
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1989..2501
DNA (513bp) protein (171aa)
Putative uncharacterized protein n=1 Tax=Thermus sp. CCB_US3_UF1 RepID=G8NAN8_9DEIN
Uncharacterized conserved protein {ECO:0000313|EMBL:BAO80580.1}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1666_curated_7
unknown

Not on your lists

2498..2725
DNA (228bp) protein (76aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1666_curated_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2650..3072)
DNA (423bp) protein (141aa)
Uncharacterized protein id=1342611 bin=GWE1_T_denit_62_9 species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1666_curated_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3273..3683)
DNA (411bp) protein (137aa)
hypothetical protein id=12495175 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1666_curated_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3687..4031)
DNA (345bp) protein (115aa)
hypothetical protein id=12495174 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1666_curated_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4313..5353
DNA (1041bp) protein (347aa)
ribosomal RNA large subunit methyltransferase N; K06941 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
Probable RNA methyltransferase Tbd_1951 id=1372018 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1666_curated_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5350..5760
DNA (411bp) protein (137aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SHI3_THIDA
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1666_curated_13
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5789..6049)
DNA (261bp) protein (87aa)
infA; translation initiation factor IF-1; K02518 translation initiation factor IF-1 id=12496847 bin=THIO_MID species=Rubrivivax gelatinosus genus=Rubrivivax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
infA; translation initiation factor IF-1
SCNpilot_expt_1000_bf_scaffold_1666_curated_14
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6153..6359)
DNA (207bp) protein (69aa)
cold shock-like protein id=12496848 bin=THIO_MID species=Thauera terpenica genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
cold-shock DNA-binding domain protein; K03704 cold shock protein (beta-ribbon, CspA family)
Tax=CG_Hydro_01
SCNpilot_expt_1000_bf_scaffold_1666_curated_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6605..8950)
DNA (2346bp) protein (782aa)
Tex-like protein protein-like protein id=1342606 bin=GWE1_T_denit_62_9 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein; K06959 uncharacterized protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_1666_curated_16
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9047..9703)
DNA (657bp) protein (219aa)
nitroreductase; K00540 [EC:1.-.-.-] id=12496860 bin=THIO_MID species=Paenibacillus sp. oral taxon 786 genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=THIO_MID organism_group=Betaproteobacteria
yfkO; putative nitroreductase YfkO
Tax=CG_Hydro_01
SCNpilot_expt_1000_bf_scaffold_1666_curated_17
Desulfomicrobium baculatum, Desulfomicrobium, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9746..10120)
DNA (375bp) protein (125aa)
hypothetical protein; K06929 id=12496861 bin=THIO_MID species=Desulfomicrobium baculatum genus=Desulfomicrobium taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein; K06929
Uncharacterized protein {ECO:0000313|EMBL:ACU90955.1}; TaxID=525897 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfomicrobiaceae; Desulfomicrobium.;" source="Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378); (Desulfovibrio baculatus).;"
SCNpilot_expt_1000_bf_scaffold_1666_curated_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10192..11052)
DNA (861bp) protein (287aa)
Ribosomal RNA large subunit methyltransferase J n=1 Tax=Pseudogulbenkiania sp. (strain NH8B) RepID=G2IVP0_PSEUL
hypothetical protein; K07115
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_1666_curated_19
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11114..11383)
DNA (270bp) protein (90aa)
putative acylphosphatase; K01512 acylphosphatase [EC:3.6.1.7] id=12497700 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
putative acylphosphatase; K01512 acylphosphatase [EC:3.6.1.7]
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1666_curated_20
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11391..13442)
DNA (2052bp) protein (684aa)
metG; methionyl-tRNA synthetase (EC:6.1.1.10); K01874 methionyl-tRNA synthetase [EC:6.1.1.10]
methionyl-tRNA synthetase n=1 Tax=Thiobacillus thioparus RepID=UPI000381BA44
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1666_curated_21
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13648..14250)
DNA (603bp) protein (201aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036EC4E4
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1666_curated_22
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14264..14515)
DNA (252bp) protein (84aa)
cytochrome C551 n=1 Tax=Thiobacillus thioparus RepID=UPI00035CF007
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_1666_curated_23
RBG_16_Gallionellales_56_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14712..15485
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium JGI 0001004-K23 RepID=UPI00036CC83D
hypothetical protein
Tax=RBG_16_Gallionellales_56_9_curated
SCNpilot_expt_1000_bf_scaffold_1666_curated_24
Thauera terpenica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15773..16036
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Thauera terpenica 58Eu RepID=S9ZL60_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:EPZ14212.1}; TaxID=1348657 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera terpenica 58Eu.;"
prepilin protein
SCNpilot_expt_1000_bf_scaffold_1666_curated_25
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16137..17432
DNA (1296bp) protein (432aa)
Uncharacterized protein n=1 Tax=Thauera sp. 63 RepID=N6Y3P4_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:ENO76992.1}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1666_curated_26
unknown

Not on your lists

17429..18442
DNA (1014bp) protein (338aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1666_curated_27
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18435..19199
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Thauera sp. 63 RepID=N6YAI6_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:ENO76994.1}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1666_curated_28
Thauera terpenica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19196..19858
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Thauera terpenica 58Eu RepID=T0AMY4_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:EPZ14209.1}; TaxID=1348657 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera terpenica 58Eu.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1666_curated_29
Methylophilaceae bacterium 11, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19855..20037
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Thauera sp. 63 RepID=N6X5L0_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:EUJ09328.1}; TaxID=1101195 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae.;" source="Methylophilaceae bacterium 11.;"
SCNpilot_expt_1000_bf_scaffold_1666_curated_30
Thauera terpenica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20050..20904
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Thauera terpenica 58Eu RepID=S9ZL56_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:EPZ14207.1}; TaxID=1348657 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera terpenica 58Eu.;"
Flp pilus assembly protein CpaB; K02279 pilus assembly protein CpaB
Displaying items 1-30 of 39 in total

View Taxonomy