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SCNpilot_expt_1000_bf_scaffold_888_curated

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_888_curated_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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168..1955
DNA (1788bp) protein (596aa)
acetolactate synthase, large subunit (EC:2.2.1.6); K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
Acetolactate synthase, large subunit n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SHE2_THIDA
Acetolactate synthase, large subunit {ECO:0000313|EMBL:AAZ97944.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_888_curated_2
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1952..2443
DNA (492bp) protein (164aa)
ilvH; acetolactate synthase 3 regulatory subunit (EC:2.2.1.6); K01653 acetolactate synthase I/III small subunit [EC:2.2.1.6]
acetolactate synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003670CC2
Acetolactate synthase, small subunit {ECO:0000313|EMBL:AAZ97943.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_888_curated_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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2476..3492
DNA (1017bp) protein (339aa)
ketol-acid reductoisomerase (EC:1.1.1.86); K00053 ketol-acid reductoisomerase [EC:1.1.1.86]
Ketol-acid reductoisomerase id=1334440 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_888_curated_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3591..4220
DNA (630bp) protein (210aa)
phosphatidylserine decarboxylase (EC:4.1.1.65); K01613 phosphatidylserine decarboxylase [EC:4.1.1.65]
Phosphatidylserine decarboxylase proenzyme id=1334441 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_888_curated_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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4235..5011
DNA (777bp) protein (259aa)
CDP-diacylglycerol--serine O-phosphatidyltransferase (EC:2.7.8.8); K00998 phosphatidylserine synthase [EC:2.7.8.8]
CDP-diacylglycerol--serine O-phosphatidyltransferase id=1334442 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_888_curated_6
endosymbiont of unidentified scaly snail isolate Monju, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5279..8335)
DNA (3057bp) protein (1019aa)
RND superfamily efflux transporter subunit n=1 Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6BID5_9GAMM
RND superfamily efflux transporter subunit {ECO:0000313|EMBL:BAN68931.1}; TaxID=1248727 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="endosymbiont of unidentified scaly snail isolate Monju.;"
acriflavin resistance protein
SCNpilot_expt_1000_bf_scaffold_888_curated_7
endosymbiont of unidentified scaly snail isolate Monju, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8332..9384)
DNA (1053bp) protein (351aa)
RND superfamily efflux transporter MFP subunit n=1 Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6CFS0_9GAMM
RND superfamily efflux transporter MFP subunit {ECO:0000313|EMBL:BAN68930.1}; TaxID=1248727 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="endosymbiont of unidentified scaly snail isolate Monju.;"
RND family efflux transporter MFP subunit
SCNpilot_expt_1000_bf_scaffold_888_curated_8
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9454..9945)
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000372FDC3
Putative transcriptional regulator, MarR family {ECO:0000313|EMBL:BAO28316.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
MarR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_888_curated_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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10172..11674
DNA (1503bp) protein (501aa)
RND efflux system, outer membrane lipoprotein, NodT family id=1319187 bin=GWE1_T_denit_62_9 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
NodT family RND efflux system outer membrane lipoprotein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_888_curated_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11671..12957
DNA (1287bp) protein (429aa)
RND transporter n=1 Tax=Thiobacillus denitrificans RepID=UPI00035D4BAC
RND family efflux transporter MFP subunit; K02005 HlyD family secretion protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_888_curated_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12954..13658
DNA (705bp) protein (235aa)
ABC transporter ATPase; K09810 lipoprotein-releasing system ATP-binding protein [EC:3.6.3.-]
ABC transporter related id=1319185 bin=GWE1_T_denit_62_9 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_888_curated_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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13658..14860
DNA (1203bp) protein (401aa)
Uncharacterized protein id=1319184 bin=GWE1_T_denit_62_9 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein; K02004 putative ABC transport system permease protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_888_curated_13
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15070..16566
DNA (1497bp) protein (499aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AGV5_9PROT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN35261.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
SCNpilot_expt_1000_bf_scaffold_888_curated_14
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16563..17564
DNA (1002bp) protein (334aa)
RND family efflux pump membrane fusion protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B3Q7_9PROT
Uncharacterized protein {ECO:0000313|EMBL:GAO36235.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
RND family efflux pump membrane fusion protein
SCNpilot_expt_1000_bf_scaffold_888_curated_15
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17561..18493
DNA (933bp) protein (311aa)
multidrug ABC transporter ATP-binding protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000369F659
Multidrug ABC transporter ATP-binding protein {ECO:0000313|EMBL:GAO36233.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
ABC transporter ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_888_curated_16
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18490..19443
DNA (954bp) protein (318aa)
ABC transporter ATP-binding protein id=12494936 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Multidrug ABC transporter ATP-binding protein {ECO:0000313|EMBL:GAO36232.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
ABC transporter ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_888_curated_17
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19440..20564
DNA (1125bp) protein (375aa)
ABC transporter membrane protein id=12494937 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
ABC transporter membrane protein
ABC transporter membrane protein {ECO:0000313|EMBL:BAN35266.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
SCNpilot_expt_1000_bf_scaffold_888_curated_18
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20573..21676
DNA (1104bp) protein (368aa)
ABC transporter membrane protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B3R1_9PROT
ABC transporter membrane protein
ABC transporter membrane protein {ECO:0000313|EMBL:BAN35267.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
SCNpilot_expt_1000_bf_scaffold_888_curated_19
R_Betaproteobacteria_61_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21678..22100
DNA (423bp) protein (141aa)
cytochrome C n=1 Tax=Thiobacillus denitrificans RepID=UPI00037BDA98
cytochrome c class II
Tax=RifCSPlowO2_12_Betaproteobacteria_61_14_curated
SCNpilot_expt_1000_bf_scaffold_888_curated_20
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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22134..22556
DNA (423bp) protein (141aa)
hypothetical protein id=12494941 bin=THIO_HI species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:ENO79273.1}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_888_curated_21

Not on your lists

22553..23278
DNA (726bp) protein (242aa)
Putative uncharacterized protein n=1 Tax=uncultured microorganism RepID=F8UHU6_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:AEI30603.1}; TaxID=358574 species="unclassified sequences; environmental samples.;" source="uncultured microorganism.;"
TonB-dependent receptor, plug
SCNpilot_expt_1000_bf_scaffold_888_curated_22
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23275..24708
DNA (1434bp) protein (478aa)
RNA-metabolising metallo-beta-lactamase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5WZU1_THIK1
RNA-metabolising metallo-beta-lactamase; K07576 metallo-beta-lactamase family protein
RNA-metabolising metallo-beta-lactamase {ECO:0000313|EMBL:ADG30507.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
SCNpilot_expt_1000_bf_scaffold_888_curated_23
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24698..25525
DNA (828bp) protein (276aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5WZU0_THIK1
Uncharacterized protein {ECO:0000313|EMBL:CDW95242.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
hypothetical protein; K06966
SCNpilot_expt_1000_bf_scaffold_888_curated_24
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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25522..26661
DNA (1140bp) protein (380aa)
acetate kinase (EC:2.7.2.1); K00925 acetate kinase [EC:2.7.2.1]
Acetate kinase n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CI62_THET1
Tax=RBG_16_Gamma2_60_9_curated
SCNpilot_expt_1000_bf_scaffold_888_curated_25
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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26658..29042
DNA (2385bp) protein (795aa)
phosphoketolase (EC:4.1.2.9); K01621 phosphoketolase [EC:4.1.2.9]
Probable phosphoketolase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DK61_9PROT
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
SCNpilot_expt_1000_bf_scaffold_888_curated_26
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

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29080..30444
DNA (1365bp) protein (455aa)
patatin; K07001 NTE family protein id=12494944 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
patatin
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
SCNpilot_expt_1000_bf_scaffold_888_curated_27
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30532..31152
DNA (621bp) protein (207aa)
Transcriptional regulator, TetR family n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AL04_9PROT
TetR family transcriptional regulator {ECO:0000313|EMBL:GAO36222.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
transcriptional regulator, TetR family
SCNpilot_expt_1000_bf_scaffold_888_curated_28
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31373..32341)
DNA (969bp) protein (323aa)
trans-hexaprenyltranstransferase (EC:2.5.1.30); K02523 octaprenyl-diphosphate synthase [EC:2.5.1.90]
Trans-hexaprenyltranstransferase {ECO:0000313|EMBL:AAZ96816.1}; EC=2.5.1.30 {ECO:0000313|EMBL:AAZ96816.1};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Trans-hexaprenyltranstransferase id=1351371 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
SCNpilot_expt_1000_bf_scaffold_888_curated_29
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


32536..32847
DNA (312bp) protein (104aa)
50S ribosomal protein L21 n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=RL21_THIDA
50S ribosomal protein L21P; K02888 large subunit ribosomal protein L21
50S ribosomal protein L21 {ECO:0000255|HAMAP-Rule:MF_01363}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_888_curated_30
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


32860..33123
DNA (264bp) protein (88aa)
50S ribosomal protein L27 n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=RL27_THIDA
rpmA; 50S ribosomal protein L27; K02899 large subunit ribosomal protein L27
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Displaying items 1-30 of 52 in total

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