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SCNpilot_expt_1000_bf_scaffold_239_curated

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Displaying items 1-30 of 244 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_239_curated_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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2..2857
DNA (2856bp) protein (952aa)
dihydrolipoamide dehydrogenase (EC:1.8.1.4); K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4]
pyruvate dehydrogenase n=1 Tax=Thiobacillus thioparus RepID=UPI00035E3DE3
Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase E3 component {ECO:0000313|EMBL:AAZ96605.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_239_curated_2
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3034..3297
DNA (264bp) protein (88aa)
prevent-host-death protein n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002625087
prevent-host-death protein
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
SCNpilot_expt_1000_bf_scaffold_239_curated_3
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3305..3745
DNA (441bp) protein (147aa)
twitching motility protein PilT n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI0002625086
PilT domain protein
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
SCNpilot_expt_1000_bf_scaffold_239_curated_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3965..5203
DNA (1239bp) protein (413aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037B4485
metal dependent phosphohydrolase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_239_curated_5
unknown

Not on your lists

comp(5246..5992)
DNA (747bp) protein (249aa)
id=12493826 bin=THIO_HI tax=THIO_HI organism_group=Betaproteobacteria
SCNpilot_expt_1000_bf_scaffold_239_curated_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6159..7319)
DNA (1161bp) protein (387aa)
serine-type D-ala-D-ala-carboxypeptidase (EC:3.4.16.4); K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Thiobacillus denitrificans RepID=UPI000379D3C2
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_239_curated_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7390..8457
DNA (1068bp) protein (356aa)
dihydroorotate dehydrogenase 2 (EC:1.3.3.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]
dihydroorotate dehydrogenase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003779215
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_239_curated_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8454..9701
DNA (1248bp) protein (416aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035C5841
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_239_curated_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9774..10679)
DNA (906bp) protein (302aa)
ABC-type multidrug transporter ATPase id=1334754 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
ABC-type multidrug transporter ATPase; K09687 antibiotic transport system ATP-binding protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_239_curated_10
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10676..10945)
DNA (270bp) protein (90aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000366E6D6
NTP binding protein; K07122
NTP binding protein containing STAS domain {ECO:0000313|EMBL:AAZ97848.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_239_curated_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10942..11577)
DNA (636bp) protein (212aa)
signal peptide protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035E3864
putative signal peptide protein; K07323 putative toluene tolerance protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_239_curated_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11628..12989)
DNA (1362bp) protein (454aa)
Putative Outer membrane protein id=1334756 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
putative outer membrane protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_239_curated_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12986..13453)
DNA (468bp) protein (156aa)
Putative ABC transporter substrate-binding protein id=1334757 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
putative ABC transporter substrate-binding protein; K02067 putative ABC transport system substrate-binding protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_239_curated_14
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13456..14244)
DNA (789bp) protein (263aa)
ABC transporter permease n=1 Tax=Thiobacillus denitrificans RepID=UPI000378D033
hypothetical protein; K02066 putative ABC transport system permease protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97852.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_239_curated_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14237..15049)
DNA (813bp) protein (271aa)
ABC transporter ATPase id=1334759 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
ABC transporter ATPase; K02065 putative ABC transport system ATP-binding protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_239_curated_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15122..15574)
DNA (453bp) protein (151aa)
Putative uncharacterized protein id=1334760 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_239_curated_17
unknown

Not on your lists

15708..16595
DNA (888bp) protein (296aa)
id=12497924 bin=THIO_MID tax=THIO_MID organism_group=Betaproteobacteria
SCNpilot_expt_1000_bf_scaffold_239_curated_18
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16666..18033)
DNA (1368bp) protein (456aa)
cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16]
Cysteine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00041}; EC=6.1.1.16 {ECO:0000255|HAMAP-Rule:MF_00041};; Cysteinyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00041}; Short=CysRS {ECO:0000255|HAMAP-Rule:MF_00041};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Cysteine--tRNA ligase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=SYC_THIDA rbh
SCNpilot_expt_1000_bf_scaffold_239_curated_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18152..19111
DNA (960bp) protein (320aa)
TPR repeat-containing protein id=12497926 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
TPR repeat-containing protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_239_curated_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19120..20268
DNA (1149bp) protein (383aa)
Uncharacterized protein id=1329860 bin=GWE1_T_denit_62_9 species=Azospira oryzae genus=Azospira taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_239_curated_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20277..20768
DNA (492bp) protein (164aa)
peptidyl-prolyl cis-trans isomerase B (EC:5.2.1.8); K03768 peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
Peptidyl-prolyl cis-trans isomerase id=1329861 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_239_curated_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20777..21508
DNA (732bp) protein (244aa)
UDP-2,3-diacylglucosamine hydrolase (EC:3.6.1.-); K03269 UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
UDP-2,3-diacylglucosamine hydrolase id=1329862 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_239_curated_23
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21503..22159)
DNA (657bp) protein (219aa)
hypothetical protein id=12497930 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97859.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_239_curated_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22156..23325)
DNA (1170bp) protein (390aa)
O-succinylhomoserine sulfhydrylase (EC:2.5.1.48); K10764 O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
O-succinylhomoserine sulfhydrylase id=1329864 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_239_curated_25
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23327..24847)
DNA (1521bp) protein (507aa)
amidophosphoribosyltransferase (EC:2.4.2.14); K00764 amidophosphoribosyltransferase [EC:2.4.2.14]
amidophosphoribosyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037963A9
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_239_curated_26
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24985..25476)
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036B3897
colicin V production protein; K03558 membrane protein required for colicin V production
Colicin V production protein {ECO:0000313|EMBL:AAZ97862.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_239_curated_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25473..26171)
DNA (699bp) protein (233aa)
hypothetical protein; K03749 DedD protein id=12497934 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein; K03749 DedD protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_239_curated_28
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26152..27423)
DNA (1272bp) protein (424aa)
folylpolyglutamate synthetase; K11754 dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
Folylpolyglutamate synthetase id=1329868 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_239_curated_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27480..28346)
DNA (867bp) protein (289aa)
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; K01963 acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2]
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta id=1329869 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_239_curated_30
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28426..29232)
DNA (807bp) protein (269aa)
tryptophan synthase, subunit alpha (EC:4.2.1.20); K01695 tryptophan synthase alpha chain [EC:4.2.1.20]
Tryptophan synthase alpha chain id=1329870 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
Displaying items 1-30 of 244 in total

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