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SCNpilot_expt_1000_bf_scaffold_895_curated

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Displaying items 1-30 of 94 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_895_curated_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..288)
DNA (288bp) protein (96aa)
Putative uncharacterized protein id=1341758 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_895_curated_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(380..607)
DNA (228bp) protein (76aa)
hypothetical protein; K04085 tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
Putative uncharacterized protein id=1341757 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_895_curated_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(725..1054)
DNA (330bp) protein (110aa)
Rhodanese-like protein id=1341756 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
rhodanese-like protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_895_curated_4
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1619..2557)
DNA (939bp) protein (313aa)
DMSO reductase subunit C; K07308 anaerobic dimethyl sulfoxide reductase subunit C (DMSO reductase anchor subunit) id=12497719 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
DMSO reductase subunit C; K07308 anaerobic dimethyl sulfoxide reductase subunit C (DMSO reductase anchor subunit)
DMSO reductase chain C {ECO:0000313|EMBL:AAZ96525.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_895_curated_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2577..3272)
DNA (696bp) protein (232aa)
ferredoxin n=1 Tax=Thiobacillus denitrificans RepID=UPI00035DF459
DMSO reductase subunit B
DMSO reductase chain B {ECO:0000313|EMBL:AAZ96524.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_895_curated_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3269..6166)
DNA (2898bp) protein (966aa)
DMSO reductase subunit A; K00183 molybdopterin oxidoreductase, molybdopterin binding subunit [EC:1.2.7.-]
DMSO reductase chain A n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SL93_THIDA
DMSO reductase chain A {ECO:0000313|EMBL:AAZ96523.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_895_curated_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6972..7484)
DNA (513bp) protein (171aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036DFD94
thiol-disulfide isomerase-like protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_895_curated_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7475..8155)
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003624720
thiol-disulfide isomerase-like protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_895_curated_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8260..8742)
DNA (483bp) protein (161aa)
Molybdenum cofactor biosynthesis protein C id=1374518 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
GTP cyclohydrolase subunit MoaC; K03637 molybdenum cofactor biosynthesis protein C
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_895_curated_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8821..10248
DNA (1428bp) protein (476aa)
Putative peptidase family M48 protein id=1374519 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
M48 family peptidase
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_895_curated_11
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10447..10821
DNA (375bp) protein (125aa)
Sulfur oxidation protein SoxX n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SF12_THIDA
monoheme cytochrome SoxX
Sulfur oxidation protein SoxX {ECO:0000313|EMBL:AAZ96520.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_895_curated_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10859..11323
DNA (465bp) protein (155aa)
sulfur oxidation protein SoxY n=1 Tax=Thiobacillus thioparus RepID=UPI000381A352
transmembrane protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_895_curated_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11382..11696
DNA (315bp) protein (105aa)
sulfur oxidation protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036F3BCA
sulfur compound chelating protein SoxZ
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_895_curated_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11856..12701
DNA (846bp) protein (282aa)
diheme cytochrome SoxA
diheme cytochrome SoxA id=12495217 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_895_curated_15
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13477..15219
DNA (1743bp) protein (581aa)
sulfate thiol esterase SoxB id=12497730 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
sulfate thiol esterase SoxB
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_895_curated_16
RBG_16_Gallionellales_57_15_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15454..15879
DNA (426bp) protein (142aa)
nitric-oxide reductase subunit C (EC:1.7.99.7); K02305 nitric oxide reductase subunit C
Nitric-oxide reductase subunit C n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SLA0_THIDA
Tax=RBG_16_Gallionellales_57_15_curated
SCNpilot_expt_1000_bf_scaffold_895_curated_17
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15919..17295
DNA (1377bp) protein (459aa)
nitric-oxide reductase subunit B; K04561 nitric oxide reductase subunit B [EC:1.7.2.5]
Nitric-oxide reductase subunit B n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SLA1_THIDA
Nitric-oxide reductase subunit B {ECO:0000313|EMBL:AAZ96514.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_895_curated_18
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17342..17935
DNA (594bp) protein (198aa)
cytochrome C oxidase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037FAAC2
putative nitric oxide reductase (Nor) complex membrane protein; K02164 nitric oxide reductase NorE protein
Putative additional subunit of nitric oxide reductase (Nor) complex, membrane protein {ECO:0000313|EMBL:AAZ96513.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_895_curated_19
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17940..18182
DNA (243bp) protein (81aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SLA3_THIDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96512.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_895_curated_20
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18191..19006
DNA (816bp) protein (272aa)
ATPase AAA n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D9057
ATPase AAA {ECO:0000313|EMBL:KIF81943.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
putative nitric oxide reductase activation protein NorQ; K04748 nitric oxide reductase NorQ protein
SCNpilot_expt_1000_bf_scaffold_895_curated_21
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19003..19380
DNA (378bp) protein (126aa)
cytochrome C oxidase subunit III n=1 Tax=Thiobacillus denitrificans RepID=UPI000378CA3C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96510.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_895_curated_22
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19377..20417
DNA (1041bp) protein (347aa)
(Fe-S)-binding protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036A9992
iron-sulfur cluster-binding protein
Iron-sulfur cluster-binding protein {ECO:0000313|EMBL:AAZ96509.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_895_curated_23
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20419..22260
DNA (1842bp) protein (614aa)
Putative nitric oxide reductase activation protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SLA7_THIDA
putative nitric oxide reductase activation protein; K02448 nitric oxide reductase NorD protein
Putative nitric oxide reductase activation protein {ECO:0000313|EMBL:AAZ96508.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_895_curated_24
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22283..22543
DNA (261bp) protein (87aa)
hypothetical protein id=12495219 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Tax=RBG_16_Betaproteobacteria_58_11_curated
SCNpilot_expt_1000_bf_scaffold_895_curated_25
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


22696..25314
DNA (2619bp) protein (873aa)
Alanine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00036}; EC=6.1.1.7 {ECO:0000255|HAMAP-Rule:MF_00036};; Alanyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00036}; Short=AlaRS {ECO:0000255|HAMAP-Rule:MF_00036};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
alaS; alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
Alanine--tRNA ligase n=2 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=SYA_THIDA
SCNpilot_expt_1000_bf_scaffold_895_curated_26
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25398..27092
DNA (1695bp) protein (565aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036E1B42
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96505.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_895_curated_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27242..28672
DNA (1431bp) protein (477aa)
Two Component Transcriptional Regulator, Fis family id=1368442 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
two component Fis family transcriptional regulator
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_895_curated_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28815..30143
DNA (1329bp) protein (443aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035CA735
ATPase, Type II secretory pathway component
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_895_curated_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30335..32113
DNA (1779bp) protein (593aa)
Putative Type II secretory pathway component PulD id=1351986 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
putative Type II secretory pathway component PulD; K02453 general secretion pathway protein D
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_895_curated_30
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32169..33278
DNA (1110bp) protein (370aa)
Putative uncharacterized protein id=1351987 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
TPR repeat-containing protein
Tax=GWE1_Thiobacillus_62_9_curated
Displaying items 1-30 of 94 in total

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