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SCNpilot_expt_1000_bf_scaffold_903_curated

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Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_903_curated_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(181..987)
DNA (807bp) protein (269aa)
inositol monophosphatase (EC:3.1.3.25); K01092 myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] id=12497201 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
inositol monophosphatase (EC:3.1.3.25); K01092 myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_903_curated_2
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1032..1778
DNA (747bp) protein (249aa)
RNA methyltransferase TrmH; K02533 tRNA/rRNA methyltransferase [EC:2.1.1.-]
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ {ECO:0000256|RuleBase:RU362024}; EC=2.1.1.200 {ECO:0000256|RuleBase:RU362024};; tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase {ECO:0000256|RuleBase:RU362024}; tRNA Cm32/Um32 methyltransferase {ECO:0000256|RuleBase:RU362024}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RNA methyltransferase TrmH, group 1 n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJN8_THIDA
SCNpilot_expt_1000_bf_scaffold_903_curated_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1831..2586
DNA (756bp) protein (252aa)
serine O-acetyltransferase (EC:2.3.1.30); K00640 serine O-acetyltransferase [EC:2.3.1.30]
Serine O-acetyltransferase {ECO:0000313|EMBL:AAZ97115.1}; EC=2.3.1.30 {ECO:0000313|EMBL:AAZ97115.1};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Serine acetyltransferase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJN7_THIDA
SCNpilot_expt_1000_bf_scaffold_903_curated_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2659..3120
DNA (462bp) protein (154aa)
BadM/Rrf2 family transcriptional regulator; K13643 Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor id=12494500 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
BadM/Rrf2 family transcriptional regulator; K13643 Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_903_curated_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3146..4357
DNA (1212bp) protein (404aa)
cysteine desulfurase IscS; K04487 cysteine desulfurase [EC:2.8.1.7]
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00038344}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00063383};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
cysteine desulfurase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037D0045
SCNpilot_expt_1000_bf_scaffold_903_curated_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4469..4855
DNA (387bp) protein (129aa)
FeS cluster assembly scaffold IscU n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJN4_THIDA
scaffold protein; K04488 nitrogen fixation protein NifU and related proteins
FeS cluster assembly scaffold IscU {ECO:0000313|EMBL:AAZ97118.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_903_curated_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4861..5184
DNA (324bp) protein (108aa)
heme biosynthesis protein HemY n=1 Tax=Thiobacillus denitrificans RepID=UPI00036E7576
Iron-sulfur cluster assembly protein IscA; K13628 iron-sulfur cluster assembly protein
Iron-sulphur cluster assembly protein IscA {ECO:0000313|EMBL:AAZ97119.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_903_curated_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5317..5844
DNA (528bp) protein (176aa)
Co-chaperone protein HscB homolog id=1326616 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hscB; co-chaperone HscB; K04082 molecular chaperone HscB
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_903_curated_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5846..7708
DNA (1863bp) protein (621aa)
Chaperone protein HscA homolog id=1326615 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hscA; chaperone protein HscA; K04044 molecular chaperone HscA
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_903_curated_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7731..8069
DNA (339bp) protein (113aa)
ferredoxin, 2Fe-2S type; K04755 ferredoxin, 2Fe-2S id=12495359 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
ferredoxin, 2Fe-2S type; K04755 ferredoxin, 2Fe-2S
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_903_curated_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8071..8265
DNA (195bp) protein (65aa)
hypothetical protein id=12497190 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_903_curated_12
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8485..9687)
DNA (1203bp) protein (401aa)
Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJ08_THIDA
hypothetical protein; K07234 uncharacterized protein involved in response to NO
Uncharacterized protein {ECO:0000313|EMBL:AAZ97362.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_903_curated_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9757..10761)
DNA (1005bp) protein (335aa)
hydrogenase expression/formation protein HypE; K04655 hydrogenase expression/formation protein HypE id=12495168 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hydrogenase expression/formation protein HypE; K04655 hydrogenase expression/formation protein HypE
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_903_curated_14
RBG_16_Gamma2_64_11_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10758..13280)
DNA (2523bp) protein (841aa)
hydrogenase maturation protein HypF n=1 Tax=Thiobacillus denitrificans RepID=UPI00037D68C2
hydrogenase maturation protein HypF; K04656 hydrogenase maturation protein HypF
Tax=RBG_16_Gamma2_64_11_curated
SCNpilot_expt_1000_bf_scaffold_903_curated_15
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13273..14412)
DNA (1140bp) protein (380aa)
hydrogenase assembly protein HupF n=1 Tax=Thiobacillus thioparus RepID=UPI0003674329
hydrogenase expression/formation protein HypD; K04654 hydrogenase expression/formation protein HypD
Hydrogenase expression/formation protein HypD {ECO:0000313|EMBL:AAZ97337.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_903_curated_16
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14409..15215)
DNA (807bp) protein (269aa)
hydrogenase accessory protein HypB; K04652 hydrogenase nickel incorporation protein HypB id=12497097 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hydrogenase accessory protein HypB; K04652 hydrogenase nickel incorporation protein HypB
Hydrogenase accessory protein HypB {ECO:0000313|EMBL:AAZ97336.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_903_curated_17
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15233..15601)
DNA (369bp) protein (123aa)
hydrogenase expression/formation protein HypA; K04651 hydrogenase nickel incorporation protein HypA/HybF id=12497096 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hydrogenase expression/formation protein HypA; K04651 hydrogenase nickel incorporation protein HypA/HybF
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_903_curated_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15594..15824)
DNA (231bp) protein (77aa)
hydrogenase assembly protein HypC n=1 Tax=Thiobacillus denitrificans RepID=UPI0003697EE7
hydrogenase expression/formation protein HupF/HypC; K04653 hydrogenase expression/formation protein HypC
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_903_curated_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15973..16446
DNA (474bp) protein (158aa)
peptidase M52, hydrogen uptake protein; K03605 hydrogenase 1 maturation protease [EC:3.4.24.-]
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035FF2DD
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_903_curated_20
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16436..16834
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003650BE4
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_903_curated_21
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16881..17960
DNA (1080bp) protein (360aa)
Ni-Fe hydrogenase, small subunit (EC:1.12.99.6); K06282 hydrogenase small subunit [EC:1.12.99.6]
Ni/Fe hydrogenase n=1 Tax=Thiobacillus thioparus RepID=UPI00035E548E
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_903_curated_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17963..18622
DNA (660bp) protein (220aa)
Putative uncharacterized protein id=1337330 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_903_curated_23
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18619..19881
DNA (1263bp) protein (421aa)
heterodisulfide reductase n=1 Tax=Thiobacillus thioparus RepID=UPI000363E139
heterodisulfide reductase
Heterodisulfide reductase {ECO:0000313|EMBL:AAZ97329.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_903_curated_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19886..21676
DNA (1791bp) protein (597aa)
Ni-Fe hydrogenase large chain (EC:1.12.99.6); K06281 hydrogenase large subunit [EC:1.12.99.6]
hydrogenase 2 large subunit n=1 Tax=Thiobacillus thioparus RepID=UPI00035E3A52
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_903_curated_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21709..22284
DNA (576bp) protein (192aa)
Membrane-bound hydrogenase component hupE id=1337334 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
[NiFe]-hydrogenase/urease accessory HupE/UreJ family protein; K03192 urease accessory protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_903_curated_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22297..22614
DNA (318bp) protein (106aa)
H+-ATPase, subunit H id=1337335 bin=GWE1_T_denit_62_9 species=Nitrosococcus halophilus genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
H+-ATPase subunit H
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_903_curated_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22611..23651
DNA (1041bp) protein (347aa)
H+transporting two-sector ATPase C (AC39) subunit; K02119 V-type H+-transporting ATPase subunit C [EC:3.6.3.14]
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000360800B
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_903_curated_28
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23653..25542
DNA (1890bp) protein (630aa)
V-type ATPase 116 kDa subunit; K02123 V-type H+-transporting ATPase subunit I [EC:3.6.3.14]
V-type ATPase 116 kDa subunit id=1337337 bin=GWE1_T_denit_62_9 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_903_curated_29
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25755..26189
DNA (435bp) protein (145aa)
H+transporting two-sector ATPase C subunit; K02124 V-type H+-transporting ATPase subunit K [EC:3.6.3.14]
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000382EA3F
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_903_curated_30
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26189..26539
DNA (351bp) protein (117aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003700448
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying items 1-30 of 31 in total

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