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SCNpilot_expt_1000_bf_scaffold_715_curated

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_715_curated_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(152..514)
DNA (363bp) protein (121aa)
hypothetical protein id=12493555 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_715_curated_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(514..1458)
DNA (945bp) protein (315aa)
LysR family transcriptional regulator n=1 Tax=Thiobacillus denitrificans RepID=UPI00035C2437
transcriptional regulator
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_715_curated_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1564..2781
DNA (1218bp) protein (406aa)
Putative membrane protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SI62_THIDA
lysophospholipid transporter LplT
Putative membrane protein {ECO:0000313|EMBL:AAZ97671.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_715_curated_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2785..3714)
DNA (930bp) protein (310aa)
band 7 protein id=12498337 bin=THIO_MID species=Gallionella capsiferriformans genus=Gallionella taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
band 7 protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_715_curated_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3732..4139)
DNA (408bp) protein (136aa)
hypothetical protein id=12498338 bin=THIO_MID species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_715_curated_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4141..4647)
DNA (507bp) protein (169aa)
hypothetical protein id=12498339 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_715_curated_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4641..5462)
DNA (822bp) protein (274aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036F485E
hypothetical protein; K06872 uncharacterized protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_715_curated_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5470..6078)
DNA (609bp) protein (203aa)
LemA family protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037F2857
hypothetical protein; K03744 LemA protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_715_curated_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6114..7169)
DNA (1056bp) protein (352aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003769A50
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_715_curated_10
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7185..7853)
DNA (669bp) protein (223aa)
putative phage DNA polymerase; K02334 DNA polymerase bacteriophage-type [EC:2.7.7.7]
DNA polymerase n=1 Tax=Thiobacillus thioparus RepID=UPI00036D7FFF
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_715_curated_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7847..8314)
DNA (468bp) protein (156aa)
30S ribosomal protein S18P alanine acetyltransferase (EC:2.3.1.-); K03789 ribosomal-protein-alanine N-acetyltransferase [EC:2.3.1.128]
alanine acetyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI000378B1CD
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_715_curated_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8311..9009)
DNA (699bp) protein (233aa)
glycoprotease; K14742 hypothetical protease [EC:3.4.-.-]
glycoprotease n=1 Tax=Thiobacillus denitrificans RepID=UPI0003637735
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_715_curated_13
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9011..10126)
DNA (1116bp) protein (372aa)
L-sorbosone dehydrogenase, putative n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SI54_THIDA
L-sorbosone dehydrogenase
L-sorbosone dehydrogenase, putative {ECO:0000313|EMBL:AAZ97679.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_715_curated_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10285..11682
DNA (1398bp) protein (466aa)
phosphate starvation protein PhoH n=1 Tax=Thiobacillus denitrificans RepID=UPI00037EBD54
nucleotide binding protein; K07175 PhoH-like ATPase
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_715_curated_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11707..12471
DNA (765bp) protein (255aa)
Putative uncharacterized protein id=1348666 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_715_curated_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12519..13007
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036DBC10
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_715_curated_17
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13011..13895)
DNA (885bp) protein (295aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037406A5
diguanylate cyclase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_715_curated_18
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13968..15473)
DNA (1506bp) protein (502aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037ED88C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97685.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_715_curated_19
R_Gallionellales_59_110, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15508..16782
DNA (1275bp) protein (425aa)
Cytochrome c biogenesis protein transmembrane region n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SJK4_GALCS
cytochrome c biogenesis protein transmembrane region
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_59_110_curated
SCNpilot_expt_1000_bf_scaffold_715_curated_20
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16785..18188)
DNA (1404bp) protein (468aa)
DEAD/DEAH box helicase; K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
ATP-dependent RNA helicase RhlE {ECO:0000256|HAMAP-Rule:MF_00968}; EC=3.6.4.13 {ECO:0000256|HAMAP-Rule:MF_00968};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RNA helicase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037397DB
SCNpilot_expt_1000_bf_scaffold_715_curated_21
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18500..19888
DNA (1389bp) protein (463aa)
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17); K01885 glutamyl-tRNA synthetase [EC:6.1.1.17]
Glutamate--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000255|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00022}; Short=GluRS {ECO:0000255|HAMAP-Rule:MF_00022};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
glutamyl-tRNA synthetase n=1 Tax=Thiobacillus thioparus RepID=UPI0003823A79
SCNpilot_expt_1000_bf_scaffold_715_curated_22
Pseudomonas xanthomarina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20194..21585)
DNA (1392bp) protein (464aa)
Terminase-like family id=12497424 bin=THIO_MID species=Thioalkalivibrio sp. ALJT genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Terminase-like family {ECO:0000313|EMBL:CEG53048.1}; TaxID=271420 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas xanthomarina.;"
Terminase-like family
SCNpilot_expt_1000_bf_scaffold_715_curated_23
unknown

Not on your lists

comp(21789..22043)
DNA (255bp) protein (85aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_715_curated_24
Pseudomonas phage YuA, Yualikevirus, Caudovirales, Viruses

Not on your lists

comp(22264..22515)
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=Pseudomonas thermotolerans RepID=UPI0003604080
Putative uncharacterized protein gp01 {ECO:0000313|EMBL:CAO77756.1}; TaxID=462590 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Siphoviridae; Yualikevirus.;" source="Pseudomonas phage YuA.;"
SCNpilot_expt_1000_bf_scaffold_715_curated_25
Celeribacter indicus, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22518..23273)
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Pseudomonas thermotolerans RepID=UPI0003789D84
Uncharacterized protein {ECO:0000313|EMBL:AJE46141.1}; TaxID=1208324 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeribacter indicus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_715_curated_26
Pseudomonas phage YuA, Yualikevirus, Caudovirales, Viruses

Not on your lists

comp(23443..23766)
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=Pseudomonas thermotolerans RepID=UPI000366B0B2
Putative uncharacterized protein gp31 {ECO:0000313|EMBL:CAO77786.1}; TaxID=462590 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Siphoviridae; Yualikevirus.;" source="Pseudomonas phage YuA.;"
SCNpilot_expt_1000_bf_scaffold_715_curated_27
unknown

Not on your lists

comp(23735..24175)
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Pseudomonas thermotolerans RepID=UPI00036A75C9
SCNpilot_expt_1000_bf_scaffold_715_curated_28
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24157..24768)
DNA (612bp) protein (204aa)
resolvase n=1 Tax=Pseudomonas thermotolerans RepID=UPI00037A1804
DNA-invertase {ECO:0000313|EMBL:EKV31520.1}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
resolvase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_715_curated_29
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24765..25238)
DNA (474bp) protein (158aa)
Putative endonuclease n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GXW9_PUSST
putative endonuclease
Putative endonuclease {ECO:0000313|EMBL:AEC22271.1}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusillimonas sp. (strain T7-7).;"
SCNpilot_expt_1000_bf_scaffold_715_curated_30
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25241..25516)
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Pseudomonas stutzeri B1SMN1 RepID=S6JLS7_PSEST
Uncharacterized protein {ECO:0000313|EMBL:EPL60729.1}; TaxID=1212549 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri B1SMN1.;"
Displaying items 1-30 of 42 in total

View Taxonomy