ggKbase home page

SCNpilot_expt_1000_bf_scaffold_496_curated_14

Organism: scnpilot_dereplicated_Thiobacillus_5

near complete RP 51 / 55 BSCG 51 / 51 ASCG 12 / 38 MC: 1
Location: comp(12356..12559)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, omega subunit; K03060 DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] id=12497816 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 95.6
  • Coverage: 68.0
  • Bit_score: 128
  • Evalue 3.60e-27
RNA polymerase, omega subunit; K03060 DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] similarity KEGG
DB: KEGG
  • Identity: 92.5
  • Coverage: 67.0
  • Bit_score: 126
  • Evalue 3.30e-27
DNA-directed RNA polymerase subunit omega {ECO:0000255|HAMAP-Rule:MF_00366}; Short=RNAP omega subunit {ECO:0000255|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_00366};; RNA polymerase omega subunit {ECO:0000255|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000255|HAMAP-Rule:MF_00366}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.5
  • Coverage: 67.0
  • Bit_score: 126
  • Evalue 1.50e-26

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Thiobacillus denitrificans → Thiobacillus → Hydrogenophilales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 204
ATGGCCCGCATCACCATCGATGATTGCATCGAAAAAATTCCCAACCGCTTCGAACTCACCCTGGCGGCGACCTATCGTGCGCGTCAGCTGGCGCAGGGTTCGCAGCCCATGGTCGAATCCCGCGACAAGCCCATCGTCACCGCCTTGCGCGAAATCGCCGCCGGCAAGGTCGGCCGTGAAATCCTCAATCGGGGCCGCGCCTGA
PROTEIN sequence
Length: 68
MARITIDDCIEKIPNRFELTLAATYRARQLAQGSQPMVESRDKPIVTALREIAAGKVGREILNRGRA*