ggKbase home page

SCNpilot_expt_1000_bf_scaffold_496_curated

Search features with annotation key words

Displaying items 1-30 of 68 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_496_curated_1
unknown

Not on your lists

comp(2..64)
DNA (63bp) protein (21aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_496_curated_2
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

171..1169
DNA (999bp) protein (333aa)
biotin--acetyl-CoA-carboxylase ligase (EC:6.3.4.15); K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037774FC
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
SCNpilot_expt_1000_bf_scaffold_496_curated_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1178..1897
DNA (720bp) protein (240aa)
putative transcriptional acitvator, Baf; K03525 type III pantothenate kinase [EC:2.7.1.33]
Type III pantothenate kinase {ECO:0000255|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000255|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000255|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000255|HAMAP-Rule:MF_01274}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036E738C
SCNpilot_expt_1000_bf_scaffold_496_curated_4
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1894..2556
DNA (663bp) protein (221aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035D4AD2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96415.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_496_curated_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2572..3432)
DNA (861bp) protein (287aa)
4-hydroxybenzoate octaprenyltransferase (EC:2.5.1.-); K03179 4-hydroxybenzoate octaprenyltransferase [EC:2.5.1.-] id=12493738 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
4-hydroxybenzoate octaprenyltransferase (EC:2.5.1.-); K03179 4-hydroxybenzoate octaprenyltransferase [EC:2.5.1.-]
4-hydroxybenzoate octaprenyltransferase {ECO:0000255|HAMAP-Rule:MF_01635}; EC=2.5.1.- {ECO:0000255|HAMAP-Rule:MF_01635};; 4-HB polyprenyltransferase {ECO:0000255|HAMAP-Rule:MF_01635}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_496_curated_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3429..4004)
DNA (576bp) protein (192aa)
chorismate lyase (EC:4.1.3.-); K03181 chorismate--pyruvate lyase [EC:4.1.3.40]
Probable chorismate pyruvate-lyase {ECO:0000255|HAMAP-Rule:MF_01632}; Short=CL {ECO:0000255|HAMAP-Rule:MF_01632};; Short=CPL {ECO:0000255|HAMAP-Rule:MF_01632};; EC=4.1.3.40 {ECO:0000255|HAMAP-Rule:MF_01632};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Probable chorismate pyruvate-lyase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=UBIC_THIDA
SCNpilot_expt_1000_bf_scaffold_496_curated_7
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4097..4981
DNA (885bp) protein (295aa)
Putative uncharacterized protein n=1 Tax=uncultured beta proteobacterium RepID=Q2Z0B5_9PROT
Putative uncharacterized protein {ECO:0000313|EMBL:CAI78485.1}; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_496_curated_8
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4981..5991
DNA (1011bp) protein (337aa)
TRAP-type C4-dicarboxylate transport system,large permase component n=1 Tax=uncultured beta proteobacterium RepID=Q2Z0B4_9PROT
TRAP-type C4-dicarboxylate transport system,large permase component {ECO:0000313|EMBL:CAI78486.1}; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
periplasmic C4-dicarboxylate binding protein DctP
SCNpilot_expt_1000_bf_scaffold_496_curated_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5999..6478
DNA (480bp) protein (160aa)
Putative uncharacterized protein n=1 Tax=uncultured beta proteobacterium RepID=Q2Z0B3_9PROT
ABC transporter permease
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_496_curated_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6475..7728
DNA (1254bp) protein (418aa)
TRAP dicarboxylate transporter, DctM subunit n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SLI9_THIDA
TRAP dicarboxylate transporter subunit DctM
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_496_curated_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7717..9666)
DNA (1950bp) protein (650aa)
ATP-dependent DNA helicase RecG (EC:3.6.1.-); K03655 ATP-dependent DNA helicase RecG [EC:3.6.4.12]
ATP-dependent DNA helicase RecG n=1 Tax=Thiobacillus denitrificans RepID=UPI00037AE24D
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_496_curated_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9753..10133)
DNA (381bp) protein (127aa)
Putative translation initiation inhibitor id=1342766 bin=GWE1_T_denit_62_9 species=uncultured beta proteobacterium genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
endoribonuclease L-PSP; K07567 TdcF protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_496_curated_13
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10165..12309)
DNA (2145bp) protein (715aa)
metal dependent phosphohydrolase (EC:2.7.6.5); K00951 GTP pyrophosphokinase [EC:2.7.6.5]
guanosine-3'''',5''''-bis(diphosphate) 3''''-pyrophosphohydrolase n=1 Tax=Thiobacillus thioparus RepID=UPI00037CDB3A
Guanosine polyphosphate pyrophosphohydrolase {ECO:0000313|EMBL:CAI78491.1}; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
SCNpilot_expt_1000_bf_scaffold_496_curated_14
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12356..12559)
DNA (204bp) protein (68aa)
RNA polymerase, omega subunit; K03060 DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] id=12497816 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
RNA polymerase, omega subunit; K03060 DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
DNA-directed RNA polymerase subunit omega {ECO:0000255|HAMAP-Rule:MF_00366}; Short=RNAP omega subunit {ECO:0000255|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_00366};; RNA polymerase omega subunit {ECO:0000255|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000255|HAMAP-Rule:MF_00366}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_1000_bf_scaffold_496_curated_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12585..13214)
DNA (630bp) protein (210aa)
guanylate kinase (EC:2.7.4.8); K00942 guanylate kinase [EC:2.7.4.8]
guanylate kinase n=1 Tax=Thiobacillus thioparus RepID=UPI00036CFB1E
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_496_curated_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13236..14102)
DNA (867bp) protein (289aa)
Putative uncharacterized protein id=1342771 bin=GWE1_T_denit_62_9 species=uncultured beta proteobacterium genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_496_curated_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14207..15151
DNA (945bp) protein (315aa)
Serine/threonine protein kinase; K00924 [EC:2.7.1.-]
serine/threonine protein kinase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037EAA5B
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_496_curated_18
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15161..16069
DNA (909bp) protein (303aa)
Serine/threonine protein phosphatase n=1 Tax=uncultured beta proteobacterium RepID=Q2Z0A4_9PROT
Serine/threonine protein phosphatase {ECO:0000313|EMBL:CAI78496.1}; TaxID=86027 species="Bacteria; Proteobacteria; Betaproteobacteria; environmental samples.;" source="uncultured beta proteobacterium.;"
protein serine/threonine phosphatase
SCNpilot_expt_1000_bf_scaffold_496_curated_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16128..16859
DNA (732bp) protein (244aa)
RNAse PH (EC:2.7.7.56); K00989 ribonuclease PH [EC:2.7.7.56] id=12497811 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
RNAse PH (EC:2.7.7.56); K00989 ribonuclease PH [EC:2.7.7.56]
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_496_curated_20
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


16955..17554
DNA (600bp) protein (200aa)
putative deoxyribonucleotide triphosphate pyrophosphatase; K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19]
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilace
Non-canonical purine NTP pyrophosphatase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SLH9_THIDA
SCNpilot_expt_1000_bf_scaffold_496_curated_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17547..18722
DNA (1176bp) protein (392aa)
coproporphyrinogen III oxidase (EC:1.3.99.22); K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22]
Putative oxygen-independent coproporphyrinogen III oxidase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SLH8_THIDA
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_496_curated_22
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18879..20174
DNA (1296bp) protein (432aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VWI7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91578.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_496_curated_23
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20161..20709
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VWI8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91579.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
SCNpilot_expt_1000_bf_scaffold_496_curated_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20724..22043
DNA (1320bp) protein (440aa)
peptidase U32; K08303 putative protease [EC:3.4.-.-]
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000363A7A3
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCNpilot_expt_1000_bf_scaffold_496_curated_25
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22006..23178)
DNA (1173bp) protein (391aa)
cytochrome C peroxidase n=1 Tax=Methylococcus capsulatus RepID=UPI0002F580F0
cytochrome c peroxidase rbh
Cytochrome c peroxidase family protein {ECO:0000313|EMBL:AAU91819.1}; TaxID=243233 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath).;"
SCNpilot_expt_1000_bf_scaffold_496_curated_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23343..24125
DNA (783bp) protein (261aa)
Dienelactone hydrolase family protein id=1342781 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
dienelactone hydrolase family protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_496_curated_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24125..24763
DNA (639bp) protein (213aa)
folE; GTP cyclohydrolase I (EC:3.5.4.16); K01495 GTP cyclohydrolase I [EC:3.5.4.16]
GTP cyclohydrolase n=1 Tax=Thiobacillus thioparus RepID=UPI00037B7043
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_1000_bf_scaffold_496_curated_28
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24780..25244
DNA (465bp) protein (155aa)
Putative uncharacterized protein id=1342784 bin=GWE1_T_denit_62_9 species=Nitrosomonas europaea genus=Nitrosomonas taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_496_curated_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25244..26332
DNA (1089bp) protein (363aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036E87FB
Zn-dependent hydrolase
Tax=GWE1_Thiobacillus_62_9_curated
SCNpilot_expt_1000_bf_scaffold_496_curated_30
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26365..26718
DNA (354bp) protein (118aa)
Putative uncharacterized protein id=1342786 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
Displaying items 1-30 of 68 in total

View Taxonomy