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SCNpilot_cont_300_bf_scaffold_656_curated

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Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_656_curated_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

194..601
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003808387
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGU53053.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_656_curated_2
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(499..3207)
DNA (2709bp) protein (903aa)
GCN5 family acetyltransferase n=1 Tax=Variovorax paradoxus RepID=UPI00036F3CF2
Acyl-CoA synthetase (NDP forming) {ECO:0000313|EMBL:EJL80412.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative NDP-forming acyl-CoA synthetase
SCNpilot_cont_300_bf_scaffold_656_curated_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3362..4771
DNA (1410bp) protein (470aa)
AMP-binding domain-containing protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XJH2_VARPD
AMP-binding domain-containing protein
AMP-binding domain-containing protein {ECO:0000313|EMBL:AGU53027.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_656_curated_4
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4834..6018
DNA (1185bp) protein (395aa)
aminotransferase n=1 Tax=Variovorax paradoxus RepID=UPI000363DD78
Fatty-acid desaturase {ECO:0000313|EMBL:EJL80411.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
fatty acid desaturase domain-containing protein
SCNpilot_cont_300_bf_scaffold_656_curated_5
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6054..6443
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000363078E
Surface antigen {ECO:0000313|EMBL:EJL80410.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
17 kDa surface antigen-like protein
SCNpilot_cont_300_bf_scaffold_656_curated_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6467..7441
DNA (975bp) protein (325aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000378A5BE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGU52909.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_656_curated_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7515..8348)
DNA (834bp) protein (278aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000370EAA1
Universal stress protein UspA-like protein {ECO:0000313|EMBL:EJL80409.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative universal stress protein
SCNpilot_cont_300_bf_scaffold_656_curated_8
unknown

Not on your lists

comp(8362..8631)
DNA (270bp) protein (90aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000380EFA6
SCNpilot_cont_300_bf_scaffold_656_curated_9
CG_Rhodof_03, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8807..10657
DNA (1851bp) protein (617aa)
ribonucleotide reductase large subunit; K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
ribonucleotide reductase n=1 Tax=Variovorax paradoxus RepID=UPI000375AB7B
Tax=CG_Rhodof_03
SCNpilot_cont_300_bf_scaffold_656_curated_10
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10686..11945)
DNA (1260bp) protein (420aa)
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI000374EDC5
Putative membrane protein {ECO:0000313|EMBL:EJL80407.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
transmembrane protein
SCNpilot_cont_300_bf_scaffold_656_curated_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12049..13086
DNA (1038bp) protein (346aa)
alcohol dehydrogenase n=1 Tax=Variovorax paradoxus RepID=UPI000367D3C0
Theronine dehydrogenase-like Zn-dependent dehydrogenase {ECO:0000313|EMBL:EJL80406.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative zinc-type alcohol dehydrogenase
SCNpilot_cont_300_bf_scaffold_656_curated_12
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13162..13542
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000371341A
Putative uncharacterized protein {ECO:0000313|EMBL:EHR69712.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_656_curated_13
Candidatus Symbiobacter mobilis, Candidatus Symbiobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13556..14233
DNA (678bp) protein (226aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000364ED9D
PRC-barrel domain protein
PRC-barrel domain protein {ECO:0000313|EMBL:AGX87523.1}; TaxID=946483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Candidatus Symbiobacter mobilis CR.;"
SCNpilot_cont_300_bf_scaffold_656_curated_14
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14321..14551
DNA (231bp) protein (77aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036C62C7
Uncharacterized protein {ECO:0000313|EMBL:EJL80404.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_656_curated_15
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14576..15802
DNA (1227bp) protein (409aa)
Methyltransferase, cyclopropane fatty acid synthase n=1 Tax=Variovorax sp. CF313 RepID=J2L587_9BURK
Methyltransferase, cyclopropane fatty acid synthase {ECO:0000313|EMBL:EJL80403.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative cyclopropane-fatty-acyl-phospholipid synthase
SCNpilot_cont_300_bf_scaffold_656_curated_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15799..17160
DNA (1362bp) protein (454aa)
FAD-linked oxidase n=1 Tax=Variovorax paradoxus RepID=UPI0003767B85
FAD/FMN-dependent dehydrogenase {ECO:0000313|EMBL:EJL80402.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative FAD-binding oxidase
SCNpilot_cont_300_bf_scaffold_656_curated_17
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17286..18125
DNA (840bp) protein (280aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036FA401
Universal stress protein UspA-like protein {ECO:0000313|EMBL:EJL80401.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative universal stress protein
SCNpilot_cont_300_bf_scaffold_656_curated_18
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18206..19750
DNA (1545bp) protein (515aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037B5939
Uncharacterized protein {ECO:0000313|EMBL:EJL80399.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative ATPase
SCNpilot_cont_300_bf_scaffold_656_curated_19
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19755..20261)
DNA (507bp) protein (169aa)
universal stress protein UspA n=1 Tax=Variovorax paradoxus RepID=UPI00036FA73D
Universal stress protein UspA-like protein {ECO:0000313|EMBL:EJL80398.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
universal stress protein, UspA family
SCNpilot_cont_300_bf_scaffold_656_curated_20
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20388..20972
DNA (585bp) protein (195aa)
hemerythrin n=1 Tax=Variovorax paradoxus RepID=UPI00036AA3C6
Uncharacterized protein {ECO:0000313|EMBL:EJL80397.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hemerythrin HHE cation binding domain-containing protein
SCNpilot_cont_300_bf_scaffold_656_curated_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20994..22655)
DNA (1662bp) protein (554aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037F73CE
putative poly-beta-hydroxybutyrate polymerase
Putative poly-beta-hydroxybutyrate polymerase {ECO:0000313|EMBL:AGU53036.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_656_curated_22
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22812..23288
DNA (477bp) protein (159aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003660B55
Uncharacterized protein {ECO:0000313|EMBL:KGR96334.1}; TaxID=1434929 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei ABCPW 111.;"
SCNpilot_cont_300_bf_scaffold_656_curated_23
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23305..23679)
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000374BA7D
DnaK suppressor protein {ECO:0000313|EMBL:EJL80396.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative transcriptional regulator, TraR/DksA family
SCNpilot_cont_300_bf_scaffold_656_curated_24
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23746..25029)
DNA (1284bp) protein (428aa)
peptidase n=1 Tax=Variovorax paradoxus RepID=UPI00036B421C
Trypsin-like serine protease with C-terminal PDZ domain containing protein {ECO:0000313|EMBL:EJL80395.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative serine protease, Do-like protein
SCNpilot_cont_300_bf_scaffold_656_curated_25
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25256..25783)
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CXA9_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL80394.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
flavodoxin domain-containing protein
SCNpilot_cont_300_bf_scaffold_656_curated_26
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25980..26402
DNA (423bp) protein (141aa)
Universal stress protein UspA-like protein n=1 Tax=Variovorax sp. CF313 RepID=J2L578_9BURK
Universal stress protein UspA-like protein {ECO:0000313|EMBL:EJL80393.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative universal stress protein
SCNpilot_cont_300_bf_scaffold_656_curated_27
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26404..27843
DNA (1440bp) protein (480aa)
peptidase S1C, Do; K01362 [EC:3.4.21.-]
peptidase n=1 Tax=Variovorax paradoxus RepID=UPI000362F60B
Trypsin-like serine protease with C-terminal PDZ domain containing protein {ECO:0000313|EMBL:EJL80392.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_656_curated_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27855..28388
DNA (534bp) protein (178aa)
NTP pyrophosphohydrolase n=1 Tax=Variovorax sp. CF313 RepID=J3CXP9_9BURK
NTP pyrophosphohydrolase {ECO:0000313|EMBL:EJL80391.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative hydrolase, NUDIX family
SCNpilot_cont_300_bf_scaffold_656_curated_29
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28427..28582
DNA (156bp) protein (52aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CQX3_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL76431.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_656_curated_30
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28579..28884
DNA (306bp) protein (102aa)
iron permease n=1 Tax=Variovorax paradoxus RepID=UPI00037BBF15
High-potential iron-sulfur protein {ECO:0000256|RuleBase:RU000620}; Short=HiPIP {ECO:0000256|RuleBase:RU000620};; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hip; high potential iron-sulfur protein, HiPIP
Displaying items 1-30 of 32 in total

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