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SCNpilot_cont_300_bf_scaffold_276_curated

Search features with annotation key words

Displaying items 1-30 of 109 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_276_curated_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..96
DNA (96bp) protein (32aa)
transporter n=1 Tax=Variovorax paradoxus RepID=UPI0003818C65
Variovorax paradoxus strain MEDvA23 contig_7, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ36208.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
outer membrane autotransporter barrel domain-containing protein
SCNpilot_cont_300_bf_scaffold_276_curated_2
Bordetella holmesii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

257..808
DNA (552bp) protein (184aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI0003754C69
Putative RNA polymerase sigma factor {ECO:0000313|EMBL:KAK83981.1}; TaxID=1331212 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella holmesii CDC-H809-BH.;"
ECF subfamily RNA polymerase sigma-70 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_300_bf_scaffold_276_curated_3
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

805..1950
DNA (1146bp) protein (382aa)
Transmembrane sensor n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6YUB0_9RHOO
Transmembrane sensor {ECO:0000313|EMBL:ENO85967.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
transmembrane sensor rbh
SCNpilot_cont_300_bf_scaffold_276_curated_4
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2077..4539
DNA (2463bp) protein (821aa)
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6T179_JANMA
fhuE3; outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid; K02014 iron complex outermembrane recepter protein
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid {ECO:0000313|EMBL:ABR89558.1}; TaxID=375286 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis).;"
SCNpilot_cont_300_bf_scaffold_276_curated_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4649..6082
DNA (1434bp) protein (478aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037BE334
Variovorax paradoxus strain MEDvA23 contig_5, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ36871.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_276_curated_6
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6110..7372)
DNA (1263bp) protein (421aa)
Transporter, major facilitator family protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RST8_9PROT
Transporter, major facilitator family protein {ECO:0000313|EMBL:EFH09628.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
putative transporter protein
SCNpilot_cont_300_bf_scaffold_276_curated_7
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7436..8458)
DNA (1023bp) protein (341aa)
Luciferase-like monooxygenase n=1 Tax=Rhizobium sp. Pop5 RepID=K0VST9_9RHIZ
Luciferase-like monooxygenase {ECO:0000313|EMBL:EJZ18038.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
luciferase family protein
SCNpilot_cont_300_bf_scaffold_276_curated_8
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8591..9562)
DNA (972bp) protein (324aa)
Transcriptional regulator, AraC-family n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IUE6_BORPD
AraC family transcriptional regulator
Transcriptional regulator, AraC-family {ECO:0000313|EMBL:CAP43534.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_cont_300_bf_scaffold_276_curated_9
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9646..10863
DNA (1218bp) protein (406aa)
Major facilitator superfamily MFS_1 n=1 Tax=Achromobacter xylosoxidans NH44784-1996 RepID=R4XYE9_ALCXX
major facilitator superfamily MFS_1
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:CCH09656.1}; TaxID=1167634 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans NH44784-1996.;"
SCNpilot_cont_300_bf_scaffold_276_curated_10
Pseudomonas chlororaphis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10901..11557)
DNA (657bp) protein (219aa)
O-methyltransferase n=1 Tax=Pseudomonas chlororaphis RepID=UPI0002E77997
Methyltransferase {ECO:0000313|EMBL:AIC20098.1}; TaxID=587753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas chlororaphis.;"
O-methyltransferase
SCNpilot_cont_300_bf_scaffold_276_curated_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11641..12273
DNA (633bp) protein (211aa)
TetR family transcriptional regulator n=1 Tax=Rhizobium leguminosarum RepID=UPI00036D940F
Variovorax paradoxus strain MEDvA23 contig_18, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33958.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
TetR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_276_curated_12
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12336..13262)
DNA (927bp) protein (309aa)
LysR-family transcriptional regulator n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MJD8_9BURK
LysR-family transcriptional regulator {ECO:0000313|EMBL:EIK89328.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
LysR family transcriptional regulator rbh
SCNpilot_cont_300_bf_scaffold_276_curated_13
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13359..14339
DNA (981bp) protein (327aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MJD6_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK89326.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein rbh
SCNpilot_cont_300_bf_scaffold_276_curated_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14348..15316)
DNA (969bp) protein (323aa)
Putative Bug-like extra cytoplasmic solute receptor, TTT family n=1 Tax=Variovorax paradoxus B4 RepID=T1XB09_VARPD
putative Bug-like extra cytoplasmic solute receptor, TTT family
Putative Bug-like extra cytoplasmic solute receptor, TTT family {ECO:0000313|EMBL:AGU49365.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_276_curated_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15352..16068)
DNA (717bp) protein (239aa)
Putative aldolase, class 2 n=1 Tax=Variovorax paradoxus B4 RepID=T1X8U7_VARPD
putative aldolase, class 2
Putative aldolase, class 2 {ECO:0000313|EMBL:AGU49357.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_276_curated_16
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16129..17775)
DNA (1647bp) protein (549aa)
Putative monooxygenase, FAD-binding protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MJD7_9BURK
Putative monooxygenase, FAD-binding protein {ECO:0000313|EMBL:EIK89327.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
putative FAD-binding monooxygenase
SCNpilot_cont_300_bf_scaffold_276_curated_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17894..18067)
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus B4 RepID=T1X9Y0_VARPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGU49358.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_276_curated_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18080..18664)
DNA (585bp) protein (195aa)
Putative aromatic-ring-hydroxylating dioxygenase, beta subunit n=1 Tax=Variovorax paradoxus B4 RepID=T1XAK3_VARPD
putative aromatic-ring-hydroxylating dioxygenase, beta subunit
Putative aromatic-ring-hydroxylating dioxygenase, beta subunit {ECO:0000313|EMBL:AGU49359.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_276_curated_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18695..19495)
DNA (801bp) protein (267aa)
Putative oxidoreductase, SDR family n=1 Tax=Variovorax paradoxus B4 RepID=T1XB04_VARPD
putative oxidoreductase, SDR family
Putative oxidoreductase, SDR family {ECO:0000313|EMBL:AGU49360.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_276_curated_20
Advenella mimigardefordensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19498..20865)
DNA (1368bp) protein (456aa)
Putative aromatic-ring-hydroxylating dioxygenase, alpha subunit n=1 Tax=Variovorax paradoxus B4 RepID=T1XA49_VARPD
Putative 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha {ECO:0000313|EMBL:AHG63849.1}; TaxID=1247726 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella mimigardefordensis DPN7.;"
putative aromatic-ring-hydroxylating dioxygenase, alpha subunit
SCNpilot_cont_300_bf_scaffold_276_curated_21
Advenella mimigardefordensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20900..21895)
DNA (996bp) protein (332aa)
Putative oxidoreductase n=1 Tax=Variovorax paradoxus B4 RepID=T1X8V1_VARPD
Putative FAD/NAD(P)-binding domain-containing oxidoreductase {ECO:0000313|EMBL:AHG63848.1}; TaxID=1247726 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella mimigardefordensis DPN7.;"
putative oxidoreductase
SCNpilot_cont_300_bf_scaffold_276_curated_22
Advenella mimigardefordensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22032..22799
DNA (768bp) protein (256aa)
Transcriptional regulator, IclR family n=1 Tax=Variovorax paradoxus B4 RepID=T1X9Y5_VARPD
Transcriptional regulator, IclR family {ECO:0000313|EMBL:AHG63847.1}; TaxID=1247726 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella mimigardefordensis DPN7.;"
transcriptional regulator, IclR family
SCNpilot_cont_300_bf_scaffold_276_curated_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22958..23959
DNA (1002bp) protein (334aa)
Putative Bug-like extra cytoplasmic solute receptor, TTT family n=1 Tax=Variovorax paradoxus B4 RepID=T1XAK7_VARPD
putative Bug-like extra cytoplasmic solute receptor, TTT family
Putative Bug-like extra cytoplasmic solute receptor, TTT family {ECO:0000313|EMBL:AGU49364.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_276_curated_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24501..24674)
DNA (174bp) protein (58aa)
Putative transposase n=1 Tax=Variovorax paradoxus B4 RepID=T1XKD8_VARPD
putative transposase
Putative transposase {ECO:0000313|EMBL:AGU52769.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_276_curated_25
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24777..26360)
DNA (1584bp) protein (528aa)
AMP-dependent synthetase and ligase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TT27_TISMK
AMP-dependent synthetase and ligase
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:AFK55915.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_cont_300_bf_scaffold_276_curated_26
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26363..27298)
DNA (936bp) protein (312aa)
Putative uncharacterized protein id=1278968 bin=GWE1_Burkholderiales_65_30 species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
hypothetical protein
Tax=GWE1_Burkholderiales_65_30_curated
SCNpilot_cont_300_bf_scaffold_276_curated_27
Spongiibacter sp. IMCC21906, Spongiibacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27373..28293)
DNA (921bp) protein (307aa)
2,4-dienoyl-CoA reductase (EC:1.3.1.34)
2,4-dienoyl-CoA reductase n=1 Tax=Pseudomonas sp. 19-rlim RepID=G3LGV0_9PSED
Uncharacterized protein {ECO:0000313|EMBL:AKH69060.1}; TaxID=1620392 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Spongiibacter.;" source="Spongiibacter sp. IMCC21906.;"
SCNpilot_cont_300_bf_scaffold_276_curated_28
Thauera terpenica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28328..29524)
DNA (1197bp) protein (399aa)
Acyl-CoA dehydrogenase n=1 Tax=Thauera terpenica 58Eu RepID=S9ZRW4_9RHOO
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EPZ16262.1}; TaxID=1348657 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera terpenica 58Eu.;"
acyl-CoA dehydrogenase
SCNpilot_cont_300_bf_scaffold_276_curated_29
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29555..30721)
DNA (1167bp) protein (389aa)
Acyl-CoA dehydrogenase n=1 Tax=Azoarcus sp. KH32C RepID=H0Q5H8_9RHOO
acyl-CoA dehydrogenase
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:BAL27241.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
SCNpilot_cont_300_bf_scaffold_276_curated_30
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30758..31651)
DNA (894bp) protein (298aa)
Citrate lyase n=1 Tax=Azoarcus sp. KH32C RepID=H0Q5H9_9RHOO
citrate lyase
Citrate lyase {ECO:0000313|EMBL:BAL27242.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
Displaying items 1-30 of 109 in total

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