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SCNpilot_cont_300_bf_scaffold_79_curated_33

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(36718..37104)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase ECF-subfamily sigma factor n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V7H5_VARPE similarity UNIREF
DB: UNIREF100
  • Identity: 41.9
  • Coverage: 124.0
  • Bit_score: 83
  • Evalue 1.50e-13
RNA polymerase ecf-subfamily sigma factor similarity KEGG
DB: KEGG
  • Identity: 41.9
  • Coverage: 124.0
  • Bit_score: 83
  • Evalue 4.60e-14
RNA polymerase ECF-subfamily sigma factor {ECO:0000313|EMBL:ADU34897.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 41.9
  • Coverage: 124.0
  • Bit_score: 83
  • Evalue 2.10e-13

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 387
ATGCGAAAGAACCATGCATTACCGCCCATGAATCCTTCGATGTTCCCGCGGGCGACAAGCACCCTCCTGCTGGGCGCGATCATCGCGCTTTCGCCCGGATTGCTCGCGGCTCAGCCCAGCCCTGAAAACTCGCGCCCGCCCCCCGACGCGGAAATCATCGCAAGGCCGCCGGCTTCGGTGGACTCGAAGCTGGCGAAGCCCGTTCCGCCCGGCAGGGATCCCGGCCTGGTCGAAAGGCCCCCGGCCAATGACCTGCCCGGCGAACGCAACCAGCCGATCGGCGCGCCCTCTTCTCCGCTCTCTTCGCCGCTCTCTCCGCCCCCGCCGCGCAAGGACTGCAAGGGGGCTGCATCCGCCGAGGCCTGCGGGCAGAATCCCGCGCGTTGA
PROTEIN sequence
Length: 129
MRKNHALPPMNPSMFPRATSTLLLGAIIALSPGLLAAQPSPENSRPPPDAEIIARPPASVDSKLAKPVPPGRDPGLVERPPANDLPGERNQPIGAPSSPLSSPLSPPPPRKDCKGAASAEACGQNPAR*