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SCNpilot_cont_300_bf_scaffold_72_curated_213

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(228784..229554)

Top 3 Functional Annotations

Value Algorithm Source
LuxR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI0003777537 similarity UNIREF
DB: UNIREF100
  • Identity: 76.7
  • Coverage: 270.0
  • Bit_score: 382
  • Evalue 3.10e-103
Variovorax paradoxus strain MEDvA23 contig_27, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ32589.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 75.4
  • Coverage: 236.0
  • Bit_score: 337
  • Evalue 2.10e-89
two component LuxR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 72.0
  • Coverage: 243.0
  • Bit_score: 326
  • Evalue 6.20e-87

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 771
ATGGAAATGAATATGAGTGTCCGTTGCCAACCCGTGCGGCCGATGCCGTCGGTTGCGCAGATGTATGGCGGTGTCTTCCATGCCGCGCTGATCGTCGCGGACGATCTTGCGGTCGCCGATCGCATGCGTCGCATCCTGGCCGAGCTCGCGCCGCGCCGCCGCATCGTGGTGGCGTCGAGCCGCGCCGAAGCCTGCAACCTGCTGGCCGCGCTGCCGTATGACCTCGCCCTGGTCGATATGCGGCTGCCGTCGAACGAAGGCATCTCGCTGCTTCATCATGTGCGCCAGAACTACCCGGGCATCGAAAGCGTCGGCATGTCCGATATCGACGACCAGGAACTGGTGGGCGCCGCGATTGCCGCGGGCGCCATCGGCTATCTGCTGACGGAAGCGGACGACATCGAGCTTGCCTATCTGCTGCGTTCGGTGGAACGCGGCGGCGCGCCGATGGACTCGCGCATCGCGCGGCGCATACTGAGTTCGATCGCCGCGTCCGCCAAGGCGCGCACGATCGAGCCGATCCGCGTGCAGGAGCCGCAGCAAGACGAGCCCGTGTCGGCCACGAAGCTGCCGCGCGGCCTGCTGTCGCCCAGGGAGCTCAAGGTGCTGCGGCTGATTGCGCAGGGCTGGAGCAACCGGCAGATCGCGGAAGCGGTCTATCTGTCGGTCAACACCATCGAGTTTCATGCCAAGAGCATCTACCGCAAGCTGTCCGTCAAGTCGCGGACCCAGGCGGTTCATGAGGCGATGCAGCACGGTCTTCTGAACTGA
PROTEIN sequence
Length: 257
MEMNMSVRCQPVRPMPSVAQMYGGVFHAALIVADDLAVADRMRRILAELAPRRRIVVASSRAEACNLLAALPYDLALVDMRLPSNEGISLLHHVRQNYPGIESVGMSDIDDQELVGAAIAAGAIGYLLTEADDIELAYLLRSVERGGAPMDSRIARRILSSIAASAKARTIEPIRVQEPQQDEPVSATKLPRGLLSPRELKVLRLIAQGWSNRQIAEAVYLSVNTIEFHAKSIYRKLSVKSRTQAVHEAMQHGLLN*