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SCNpilot_cont_300_bf_scaffold_224_curated_12

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(14417..18076)

Top 3 Functional Annotations

Value Algorithm Source
Type VI secretion protein IcmF n=1 Tax=Variovorax sp. CF313 RepID=J2TED2_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 95.0
  • Coverage: 999.99
  • Bit_score: 2310
  • Evalue 0.0
Type VI secretion protein IcmF {ECO:0000313|EMBL:EJL76647.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.0
  • Coverage: 999.99
  • Bit_score: 2310
  • Evalue 0.0
type VI secretion protein icmf; K11891 type VI secretion system protein ImpL similarity KEGG
DB: KEGG
  • Identity: 92.6
  • Coverage: 999.99
  • Bit_score: 2254
  • Evalue 0.0

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Taxonomy

Variovorax sp. CF313 → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3660
ATGCTGCGCGCCATCTTCCGTTTTCTTATCGGCCGCGATCTCTGGGTGTTCCTGGGTCTGGTCGCGCTCGCGTTCCTGATCTGGATCATCGGCCCCGCGATCGCGGTGGGCCGCTACCGTCCGCTCGAGGACGAGATCGTGCGCATCGCCGTCATCGCGCTGATGTTCGCGATATGGCTCGCGCGGCTGGTCTACCGCAAGTGGCGCGAGCGCCGCCTCAACGCGCAGCTGCTGAACCAGTTGCGCACGCCCTCCAAGAAAGAGAAAGAGGCCAAGCCGGAGGACGCGCCCGAGATCAAGGAGCTGCAGAGCGGCTTCACCGACGCCACGGCCATCCTCAAGAACATGCGCTTCGGGCAGGGCGCCGACGGCAAGCCCGCGAGCCGCTTCTCGGTGTTCGACCGGCAGTACCTGTACCAGCTGCCCTGGTACATCTTCATCGGCGCGCCGGGCTCGGGCAAGACCACGGCGCTGGTCAACTCCGACCTCGACTTCCCGCTGGCCGACCAGCTCGGCAAGGCCGCGGTGCGCGGCATCGGCGGCACGCGCAACTGCGACTGGTGGTTCACCAACGAAGCCGTGCTGATCGACACCGCCGGGCGCTACACCACGCATGAAAGCAACCGCGAGACTGACGAAGGCGAGTGGAAGGGCTTCCTCGAACTGCTGAAGAAGTTCCGCCCGCGCCAGCCGATCAACGGCGCGATCCTCACCATCAGCATCGCCGACCTGCCGCTGGCCGACGACGCGCAGCGCGCGCGCCATGCGATGGCGCTGCGCAAGCGCCTGCTGGAGCTGCGCAACGACTTGGGCATCGACTTCCCGGTGTACGTGCTGGTCACCAAGACCGACTTGCTCGCGGGCTTCAACGAATACTTCGGCTCGCTGGGCCGCGCCGAGCGCCAGCAGGTGTGGGGCTTCACCTTCCCCATCGAGGGAAACGCCGCGAACAAGGCGGCAAAGGGTGCGGCGCCGCTGAAAGGCGGTGACCTGCGCGAACGCTTCCACCAGGAATACAGGCTGCTTCACCAGCGCCTCGACGAACGCTTGCCCGAGCTGCTGGCGGCCGAGCCCGATCCGATGCGGCGCGCGCAGGCCTACCTGCTGCCGCAGCAGTTCGCAAGCTTCGAGGACATCCTCGGCACCTTCCTGGCCGATGTGTTCAACCCGTCGAAGTTCGAGGCCGCCTCGATGCTGCGCGGCGTGTACTTCACCAGCGGCACGCAGGAGGGCACCGCCTTCGACCGCGTGATGGGCGCCATCAAGCGCTACCTGCAGGTCAACGCGCCGCCCGCGCCGCCGCCGGGCCCGGGCAAGAGCTACTTCCTGAAGGAGCTGCTGCAGCAGGTGATCTTCCGCGACGCGGGCGTGGCCGGCACCAACCTGCGCTGGTACCGGCGCAAGCGCGCCATCGACATCGCGGGCTACAGCGTGATCGGTGTGCTGCTGGTGCTGTTCCTCGGCGCCTGCGTGAACAGCTGGCGCAACAACAAGGACTACGTGGCCGAGGTCGACGGCAATGCCAAGGCCTTCAACAAGGCGGCCGCGCGCGGCGAGCTGCCGACGGTGGTCGATTCGGGCGGTGACATCGCGAGTTCGCTGCTCATCCTCGACCGGCTGCGCGACCTGCCGAAGTCGAGCCACTTCGACGTGAGCGATCCGCCGCTGTCGTACCGCTTCGGCCTCTACCAGGGCGAGAAGCTGCAGGCCGCGACCGATGGCGTGTATCAGCGCGCGCTCGAAACCGTGCTGCTGCCGCAGGCCGCGCAGCGCGTGGAGCAGTCGCTGCGCGAGGCCTCGAAGAACGACGCCGAATACAGCTACGAGGCGCTCAAGGCCTACCTGATGCTGTTCGACGCCGAACGCTACGACGCCGACTTCCTGCAGGCCTGGCTGTTGAGCGACGTCGACCGCAAGATCGGGGCGTCGCTCACGCGCGAGCAGCGCACCAACCTCGAGTCGCACCTGAAGGCGCTGTTCGCCGGCCGCGTGCTGACCTCGCCCTTCGCGAAGGACGAGCGCCTCATCACGCAGACGCGCGAGCGCCTGGCCGGCGTGCCGCTGGCGCAGCGCTCCTATGCGCGGCTGCGGCGCATATTGCTGCAGACCAGCCCGCCCAATGCCTTCTCCATCGCCGAGGCGGGCGGGGCCGAGTCGGCGCTGGTGATCCGCCGCGCGAGCGGCAAGCCGCTGACCGACGGCATCCCCACGCTCTTCACCTACCGCGGCTACTGGGACATCTTCGACAAGCGCATGGCCGAGACCACGCTGTCGCTGGAGCAGGAAGACCGCTGGGTGCTGCAGATCCGAGCGCCGGGCATCGCCGACATCACCTCGCGCGAACTGCTGCTGCGCGAAGTGCGCAGGCTCTACCTCACCGACTACATCCGGGTGTGGGACGAGTACCTCACCGACATCCGGCTGGCCGACAGCCGCTCGCTGCTGCAGAGCATCCAGATGACGCGCGTGCTCTCGACCTCGGAGTCGCCGATGTCGCGCATCATCCGCGGCGCCGCGCGCGAGACTGACCTGCTGCGCAACCACGACGAGGCCGCGCGCGGCCTGCTCGACCAGGCGCAGAACCGCGTGGCCAGCACGCGCGAGCGCATCGAGCAGCTCATCGGCCAGCCCGACGGCAGCCAGCGCCGCAATGCGCGGGTGGACCGGCCCGAGTCGCTGGTGGACAACCACTTCGAGCCGCTGCGCCGCATGGTGACCGCGCCCAAGCAGGGTGGGCAGGCGCCCATCGACGCGACCGCCGCGCTCATCAACGAGCTCTACACCTTCCTCACCGCCACCGACACCGCGCTGCGCAGCGGCAACATCCCGCCGTCGAGCGATGCCGTCACCAAGGTGCAGGCCGAGGCGGGGCGCCTGCCGGTGCCGTTCCAGGGCATGCTGAACGACCTGTCGGCCACCGCGTCGTCGAAGGCGGCGGCGGTGACGCGGCAGAACATCGGGCAGAGCGCGGCCGCCAGCATCGGTTCGTTCTGCAACCAGGCGATCGCGGGGCGCTACCCGTTCTCGCGCGGATCGAACCGCGACGTGGCCTCGGGCGACTTCGCGCAGCTGTTCGCGCCGGGCGGGATGATGGATGACTTCTTCCAGAAGAACCTCATCACCCAGGTCGACACCTCGGTCAACCCGTGGGCCTTCAAGCGCGGCGTGGACGGCAGCGCCGCTGGGCGCTCGGCCTACCTCGATTCCTTCCAGAAGGCGCAGGCGATCCGCGACGTGTTCTTCTCGGGCATGGCGGGCGGGCGCACGCCGTCGTTCACGCTCGACATCCGCCCGGAGGACATGGACGCCGCGCTCACGCAGTTCACGCTCGACATCGACGGCCAGACGGTGCGCTACGCGCACGGCCCGCAGGCGCCCAGTACCGTCAAGTGGCCAGGGCCGCGCAACAGCAACCAGGTGCGCCTGCAGGTGACCACCGCCAACGGCACGCCGGCCGGCGGCATCGTGACCGAAGGGCCGTGGGCGCTGCACCGCCTGTTCGACAAGGCTTCGATCTCTTCGGGCAGCTCGCCCGAATCCTTCAACGCGACCTTCGACCTGCAGGGCAAGAAGGTGGTGCTGGCGGTGACGGCCAACAGCGTCTACAACCCGCTGCGGTTGCCGCAGATGAACAGCTTCTCCTGCCCAGGGAAGTCCTGA
PROTEIN sequence
Length: 1220
MLRAIFRFLIGRDLWVFLGLVALAFLIWIIGPAIAVGRYRPLEDEIVRIAVIALMFAIWLARLVYRKWRERRLNAQLLNQLRTPSKKEKEAKPEDAPEIKELQSGFTDATAILKNMRFGQGADGKPASRFSVFDRQYLYQLPWYIFIGAPGSGKTTALVNSDLDFPLADQLGKAAVRGIGGTRNCDWWFTNEAVLIDTAGRYTTHESNRETDEGEWKGFLELLKKFRPRQPINGAILTISIADLPLADDAQRARHAMALRKRLLELRNDLGIDFPVYVLVTKTDLLAGFNEYFGSLGRAERQQVWGFTFPIEGNAANKAAKGAAPLKGGDLRERFHQEYRLLHQRLDERLPELLAAEPDPMRRAQAYLLPQQFASFEDILGTFLADVFNPSKFEAASMLRGVYFTSGTQEGTAFDRVMGAIKRYLQVNAPPAPPPGPGKSYFLKELLQQVIFRDAGVAGTNLRWYRRKRAIDIAGYSVIGVLLVLFLGACVNSWRNNKDYVAEVDGNAKAFNKAAARGELPTVVDSGGDIASSLLILDRLRDLPKSSHFDVSDPPLSYRFGLYQGEKLQAATDGVYQRALETVLLPQAAQRVEQSLREASKNDAEYSYEALKAYLMLFDAERYDADFLQAWLLSDVDRKIGASLTREQRTNLESHLKALFAGRVLTSPFAKDERLITQTRERLAGVPLAQRSYARLRRILLQTSPPNAFSIAEAGGAESALVIRRASGKPLTDGIPTLFTYRGYWDIFDKRMAETTLSLEQEDRWVLQIRAPGIADITSRELLLREVRRLYLTDYIRVWDEYLTDIRLADSRSLLQSIQMTRVLSTSESPMSRIIRGAARETDLLRNHDEAARGLLDQAQNRVASTRERIEQLIGQPDGSQRRNARVDRPESLVDNHFEPLRRMVTAPKQGGQAPIDATAALINELYTFLTATDTALRSGNIPPSSDAVTKVQAEAGRLPVPFQGMLNDLSATASSKAAAVTRQNIGQSAAASIGSFCNQAIAGRYPFSRGSNRDVASGDFAQLFAPGGMMDDFFQKNLITQVDTSVNPWAFKRGVDGSAAGRSAYLDSFQKAQAIRDVFFSGMAGGRTPSFTLDIRPEDMDAALTQFTLDIDGQTVRYAHGPQAPSTVKWPGPRNSNQVRLQVTTANGTPAGGIVTEGPWALHRLFDKASISSGSSPESFNATFDLQGKKVVLAVTANSVYNPLRLPQMNSFSCPGKS*