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SCNpilot_cont_300_bf_scaffold_224_curated

Search features with annotation key words

Displaying items 1-30 of 84 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_224_curated_1
unknown

Not on your lists

comp(947..1297)
DNA (351bp) protein (117aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_224_curated_2
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1431..1931)
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RWA3_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EFV95278.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_224_curated_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2071..2904)
DNA (834bp) protein (278aa)
Putative metallophosphoesterase n=1 Tax=Variovorax paradoxus B4 RepID=T1X4F9_VARPD
putative metallophosphoesterase
Putative metallophosphoesterase {ECO:0000313|EMBL:AGU47787.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_224_curated_4
Phaeodactylibacter xiamenensis, Phaeodactylibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5312..5569
DNA (258bp) protein (86aa)
Uncharacterized protein {ECO:0000313|EMBL:KGE86286.1}; TaxID=1524460 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Phaeodactylibacter.;" source="Phaeodactylibacter xiamenensis.;"
SCNpilot_cont_300_bf_scaffold_224_curated_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6368..6718)
DNA (351bp) protein (117aa)
Putative transposase n=1 Tax=Variovorax paradoxus B4 RepID=T1XNE8_VARPD
putative transposase
Putative transposase {ECO:0000313|EMBL:AGU53824.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_224_curated_6
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7254..8627
DNA (1374bp) protein (458aa)
hypothetical protein; K07154 serine/threonine-protein kinase HipA [EC:2.7.11.1]
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GR13_PUSST
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
SCNpilot_cont_300_bf_scaffold_224_curated_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8703..9041
DNA (339bp) protein (113aa)
cytochrome C n=1 Tax=Variovorax paradoxus RepID=UPI0003763DC9
cytochrome c class I; K08738 cytochrome c
Cytochrome c class I {ECO:0000313|EMBL:ACS22942.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_224_curated_8
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9550..10953
DNA (1404bp) protein (468aa)
Mg chelatase-related protein n=1 Tax=Variovorax sp. CF313 RepID=J3CQT9_9BURK
Mg chelatase-related protein {ECO:0000313|EMBL:EJL76644.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
mg chelatase subunit chli; K07391 magnesium chelatase family protein
SCNpilot_cont_300_bf_scaffold_224_curated_9
unknown

Not on your lists

11061..11342
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037E0EBD
SCNpilot_cont_300_bf_scaffold_224_curated_10
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11757..13670)
DNA (1914bp) protein (638aa)
serine/threonine protein kinase; K08282 non-specific serine/threonine protein kinase [EC:2.7.11.1]
Protein kinase family protein n=1 Tax=Variovorax sp. CF313 RepID=J2K8S6_9BURK
Protein kinase family protein {ECO:0000313|EMBL:EJL76645.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_224_curated_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13702..14415)
DNA (714bp) protein (238aa)
Type VI secretion-associated protein, BMA_A0400 family n=1 Tax=Variovorax sp. CF313 RepID=J3CRA8_9BURK
Type VI secretion-associated protein, BMA_A0400 family {ECO:0000313|EMBL:EJL76646.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
type VI secretioN-associated protein; K11890 type VI secretion system protein ImpM
SCNpilot_cont_300_bf_scaffold_224_curated_12
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14417..18076)
DNA (3660bp) protein (1220aa)
Type VI secretion protein IcmF n=1 Tax=Variovorax sp. CF313 RepID=J2TED2_9BURK
Type VI secretion protein IcmF {ECO:0000313|EMBL:EJL76647.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
type VI secretion protein icmf; K11891 type VI secretion system protein ImpL
SCNpilot_cont_300_bf_scaffold_224_curated_13
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18076..19446)
DNA (1371bp) protein (457aa)
Type VI secretion system OmpA/MotB family protein n=1 Tax=Variovorax sp. CF313 RepID=J2KUG6_9BURK
Type VI secretion system OmpA/MotB family protein {ECO:0000313|EMBL:EJL76648.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein; K11892 type VI secretion system protein ImpK
SCNpilot_cont_300_bf_scaffold_224_curated_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19455..20831)
DNA (1377bp) protein (459aa)
Type VI secretion protein, VC_A0114 family n=1 Tax=Variovorax sp. CF313 RepID=J3CQU2_9BURK
Variovorax paradoxus strain MEDvA23 contig_4, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ36966.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
type VI secretion protein; K11893 type VI secretion system protein ImpJ
SCNpilot_cont_300_bf_scaffold_224_curated_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20998..21513)
DNA (516bp) protein (172aa)
type VI secretion protein n=1 Tax=Variovorax paradoxus RepID=UPI00037AA0F5
type VI secretion lipoprotein, VC_A0113 family
Type VI secretion lipoprotein, VC_A0113 family {ECO:0000313|EMBL:AGU47375.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_224_curated_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21643..22053
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus B4 RepID=T1X4V4_VARPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGU47374.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_224_curated_17
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22118..24004
DNA (1887bp) protein (629aa)
Type VI secretion system FHA domain protein n=1 Tax=Variovorax sp. CF313 RepID=J2TED7_9BURK
Type VI secretion system FHA domain protein {ECO:0000313|EMBL:EJL76652.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
FHA domain containing protein; K07169 FHA domain-containing protein
SCNpilot_cont_300_bf_scaffold_224_curated_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23997..24818
DNA (822bp) protein (274aa)
serine/threonine phosphatase n=1 Tax=Variovorax paradoxus RepID=UPI00036ACBD9
putative serine/threonine phosphatase
Putative serine/threonine phosphatase {ECO:0000313|EMBL:AGU47372.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_224_curated_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24841..25221)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus B4 RepID=T1X4J9_VARPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGU47371.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_224_curated_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25239..25904)
DNA (666bp) protein (222aa)
Putative uncharacterized protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CUW2_VARPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS20398.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_224_curated_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25940..27010)
DNA (1071bp) protein (357aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000370DFC9
pentapeptide repeat-containing protein
Pentapeptide repeat protein {ECO:0000313|EMBL:ACS20397.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_224_curated_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27007..29610)
DNA (2604bp) protein (868aa)
Pentapeptide repeat protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CUW0_VARPS
pentapeptide repeat-containing protein
Pentapeptide repeat protein {ECO:0000313|EMBL:ACS20396.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_224_curated_23
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29607..30002)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HRS4_ACHXA
Uncharacterized protein {ECO:0000313|EMBL:EYR68261.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_224_curated_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30010..32376)
DNA (2367bp) protein (789aa)
Type VI secretion system Vgr family protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CX60_VARPS
type VI secretion system Vgr family protein
Type VI secretion system Vgr family protein {ECO:0000313|EMBL:ACS16864.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_224_curated_25
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32409..35129)
DNA (2721bp) protein (907aa)
Type VI secretion ATPase, ClpV1 family n=1 Tax=Variovorax sp. CF313 RepID=J2K8U0_9BURK
Type VI secretion ATPase, ClpV1 family {ECO:0000313|EMBL:EJL76660.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
type VI secretion ATPase, clpv1 family; K11907 type VI secretion system protein VasG
SCNpilot_cont_300_bf_scaffold_224_curated_26
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35126..36301)
DNA (1176bp) protein (392aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003806101
Type VI secretion protein, VC_A0111 family {ECO:0000313|EMBL:EJL76661.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
type VI secretion protein; K11895 type VI secretion system protein ImpH
SCNpilot_cont_300_bf_scaffold_224_curated_27
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36298..38169)
DNA (1872bp) protein (624aa)
Type VI secretion protein, VC_A0110 family n=1 Tax=Variovorax sp. CF313 RepID=J2TEE5_9BURK
Type VI secretion protein, VC_A0110 family {ECO:0000313|EMBL:EJL76662.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
type VI secretion protein; K11896 type VI secretion system protein ImpG
SCNpilot_cont_300_bf_scaffold_224_curated_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38170..38718)
DNA (549bp) protein (183aa)
Type VI secretion system lysozyme-related protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CX56_VARPS
type VI secretion system lysozyme-like protein; K11897 type VI secretion system protein ImpF
Type VI secretion system lysozyme-related protein {ECO:0000313|EMBL:ACS16860.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_224_curated_29
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38715..39578)
DNA (864bp) protein (288aa)
Protein of avirulence locus involved in temperature-dependent protein secretion n=1 Tax=Variovorax sp. CF313 RepID=J3CQU9_9BURK
Protein of avirulence locus involved in temperature-dependent protein secretion {ECO:0000313|EMBL:EJL76664.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
ImpE domain-containing protein
SCNpilot_cont_300_bf_scaffold_224_curated_30
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39675..40157)
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000371C227
Hemolysin-coregulated protein (Uncharacterized) {ECO:0000313|EMBL:EJL76665.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein; K11903 type VI secretion system secreted protein Hcp
Displaying items 1-30 of 84 in total

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