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SCNpilot_cont_300_bf_scaffold_224_curated_28

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(38170..38718)

Top 3 Functional Annotations

Value Algorithm Source
Type VI secretion system lysozyme-related protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CX56_VARPS similarity UNIREF
DB: UNIREF100
  • Identity: 98.3
  • Coverage: 173.0
  • Bit_score: 336
  • Evalue 1.40e-89
type VI secretion system lysozyme-like protein; K11897 type VI secretion system protein ImpF similarity KEGG
DB: KEGG
  • Identity: 98.3
  • Coverage: 173.0
  • Bit_score: 336
  • Evalue 4.30e-90
Type VI secretion system lysozyme-related protein {ECO:0000313|EMBL:ACS16860.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 98.3
  • Coverage: 173.0
  • Bit_score: 336
  • Evalue 1.90e-89

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 549
ATGAGCGCCTTGATAGACCGCCACATCGACGGAGATTCGCAGCAGGAAAGCGTCGCGCGCGACCGCCTGCAGCCCGTGCTGCTCGACCGCCTCACCGACAAGGCGCCGCAGAGCCGGCAGGAGCGCGCGGGCGCGTTTCTCATGAGCGGCAAGCTGCTGCGCGACTCGGTGCTGCGCGACCTGCAGTGGCTGCTGAACACCACCAACTTCGGCGCCGACCACGGCATCAACGCCATGCCGCGCGCGCGCCGCTCGGTGGTGAACTACGGCGTGCGCGGCTGGGCCGGCGGGCGCATGTCGGAAGTCGACTTCGCCGACGTCGAGGCCGCCATCCGCGCCGCCATCATCGACTTCGAGCCGCGCATCATGAAGGACAGCATCGACGTGCGCTGCGTGACCGACGCGACCGACCTGGAGCACCACAACCTGCTCGCGCTCGAGATCCGCGGCACGCTGTGGTCGGTGCCCTACCCGATCGAATTCATCCTGCGTTCCGAACTGGACCTGGAGAGCGGGCACATGGTGCTGCGGCCCACGGGAGGCCTCTGA
PROTEIN sequence
Length: 183
MSALIDRHIDGDSQQESVARDRLQPVLLDRLTDKAPQSRQERAGAFLMSGKLLRDSVLRDLQWLLNTTNFGADHGINAMPRARRSVVNYGVRGWAGGRMSEVDFADVEAAIRAAIIDFEPRIMKDSIDVRCVTDATDLEHHNLLALEIRGTLWSVPYPIEFILRSELDLESGHMVLRPTGGL*