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SCNpilot_cont_300_bf_scaffold_224_curated_24

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(30010..32376)

Top 3 Functional Annotations

Value Algorithm Source
Type VI secretion system Vgr family protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CX60_VARPS similarity UNIREF
DB: UNIREF100
  • Identity: 60.8
  • Coverage: 795.0
  • Bit_score: 945
  • Evalue 2.80e-272
type VI secretion system Vgr family protein similarity KEGG
DB: KEGG
  • Identity: 60.8
  • Coverage: 795.0
  • Bit_score: 945
  • Evalue 8.70e-273
Type VI secretion system Vgr family protein {ECO:0000313|EMBL:ACS16864.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 60.8
  • Coverage: 795.0
  • Bit_score: 945
  • Evalue 3.90e-272

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2367
ATGGACCGTATCGTCATCGCCCACACCCCGCTCGCGGAAGACCAGCTCATGTTCCGTTCGATGAACGGCACCGAAGGTCTTTCGCGACTCTTCGATTTCGAGGTCGACCTGCTGAGCCCGAGCGCCGCGATCGACCTGCAGTCGGTGCTGGGCAAGCCGCTCTCGCTGGAAATCAAGACGGCCGGCGCGCCGCGCTTTCTCAGCGGGCAGGTGGTGCGCTTCTCGATGATCGGCCGCGAAGGGCGCACCTCGCGCCACACCGTCTATCGCGCCAGCGTGCGCCCCTCGCTCTGGTATCTCACGCGCACGAGCGGCTTTCGCATCTTCCAAAACAAGACCGTGGTCGAGATGCTCGAGGAGGTGTTCGCCGACTACGACTTCGCCTTCGAGAAGAAGCTCACCGCTTCCTACCGCCAGTGGGAGCACTGCGCGCAGTACAACGAGAGCGACTTCGCGTTCGTGAGCCGGCTCATGGAGCTCGAAGGCATCTACTACTACTTCAAGCACGAGCAGAACGAGCACACGCTCGTGCTGGCAGACGACATCGGCGCGCACGAGCCGATGCCGGGCTACGAGACCATCGACTATTTCGCCTCCGACCGCGAAGTGACCGAGGACATCGAGGTGATAGACGAATGGCGCGTGACAGGCGAGGTGCGCACCGGCCGCTACACGGTGGACGACTTCAACTTCACGACGCCGGGCAGCGACCTGACCAACGTGCGCTCCCAGCCGCAGCCGCACGACCATGCCGACTACGAAATGTACGAATGGCTGGGCGAGTACACCAACGCCGGCGAAGGCGAGCACTACGCGCGCGTGCGGCTCGAGGAGGCGCAGGCCCTGGGCGAACGCAGCGAGGGCCATGCCACGGTGCGCGGCATGGCGCCGGGCTACAAGTTCACCATGCGCGGCTCGGCCCGCGAGGAGGACAACCGCGAGTACCTGATCGTCTCGGTGGCCTACGCGCTGCGCGAGGGCGGCTACGCCAGCGGCGTCGAGCAGGGCGAGTACGGCTTCGGCTTCGTGGCGCAGCCCACCTCGCTGCCGTACCGCGCGCCCCGCGTCACCAGCGTTCCGCGCACCAGCGGCCCGCAGACCGCCGTGGTGGTGGGCCCCGAGGGCAAGGAGATCTGGACCGACCAGTACGGCCGCGTGAAGGTGCAGTTCCGCTGGGACCGCAGCGGCCGGCGCAACGAGAATTGCTCGTGCTTCGTGCGCGTGTCGCAGGTCTTCGCGGGCGACGGCTTCGGCGCGGTGTTCACGCCGCGCATCGGGCAGGAGGTGATCGTCGACTTCATCGGCGGCCTTGCCGACCGGCCGATCATCACCGGGCGCGTGTACAACCCGCGCCACATGCCGCCCTTCGACCTGCCGGGCGAGGACACCAAGAGCGGTCTCGTCACGCGCTCCACGCCGGGCGGCTCGCCGGCCACGGCGAACTCGCTGGTGTTCGAGGACCGGATCGGCGCCGAGTTCGTGGCGCTGCATGCCGAGCGCAACCTGAACGTGTCGGTCGAGGCCGACGAGACGCACGACACCGGGGGCTCCCGCACCACGGTGATCGAGGGCCCCGACGTGCTCACCGACAACACGCTGCGCGACGCGACCGTCAACGGCCCCGACACGCTGGAGGTCAACGGGCCGCAGACCATCACCATCAACGGGCCGCAGACGCAGACCGTCAACGGCCTGCAGACCGAGACCATCAACGGCCCGCGCGTGGACACCGTGACCGCCAACGAGATCCGCACGGTGGTCGCGGGCCGGCTCGACACGGTCACCGCGTACGAGACCGTCGTCATCAACGGCGTGCGCAGCGAGACGGTGCATGGGCCGTCGACGGTCACGGTCGACGACGCGCGCCAGGACACCTTCAAGTCGAGTTGGACTCGCGAGGTGACGGGGGCGTCCACCGACACGCTCAAGTCCGGCCTGACCGAGACCATCACCGGCACCCACAAATCCACCGTGAGCGACGCCTACGACGGCGAGGCCAAGACCGTGACCATCAAGGCCACGGGCGGCGACGTGGTCATCACAGCCTCCGGCGACATGACGCTGGAGGCCAACTGGGTCAAGAAGATCAGCCGCGACCTGCACTGGGACTCCGCGCCGGTGCGCCTGACCAACACCGGCGTCAACGTCAACTTCAACGGCATCGCCACCAGCAGCAGCGGCCTGGCCAACTTCAACAACCTCCTGCAGGTCTCGACCAACGGCGCGCGGCTGGAGTTCTTCGGCTTCGGCTATGCCTTCGGCCTCTACGCGACCACGCAGACGCTCGCGCAGACCGGCAACAAGGGCTACGACATCGAGATGGGCGAAGTGGCGCTGTACTTCAAGCTGCTGACGGGCTTCGCCTGA
PROTEIN sequence
Length: 789
MDRIVIAHTPLAEDQLMFRSMNGTEGLSRLFDFEVDLLSPSAAIDLQSVLGKPLSLEIKTAGAPRFLSGQVVRFSMIGREGRTSRHTVYRASVRPSLWYLTRTSGFRIFQNKTVVEMLEEVFADYDFAFEKKLTASYRQWEHCAQYNESDFAFVSRLMELEGIYYYFKHEQNEHTLVLADDIGAHEPMPGYETIDYFASDREVTEDIEVIDEWRVTGEVRTGRYTVDDFNFTTPGSDLTNVRSQPQPHDHADYEMYEWLGEYTNAGEGEHYARVRLEEAQALGERSEGHATVRGMAPGYKFTMRGSAREEDNREYLIVSVAYALREGGYASGVEQGEYGFGFVAQPTSLPYRAPRVTSVPRTSGPQTAVVVGPEGKEIWTDQYGRVKVQFRWDRSGRRNENCSCFVRVSQVFAGDGFGAVFTPRIGQEVIVDFIGGLADRPIITGRVYNPRHMPPFDLPGEDTKSGLVTRSTPGGSPATANSLVFEDRIGAEFVALHAERNLNVSVEADETHDTGGSRTTVIEGPDVLTDNTLRDATVNGPDTLEVNGPQTITINGPQTQTVNGLQTETINGPRVDTVTANEIRTVVAGRLDTVTAYETVVINGVRSETVHGPSTVTVDDARQDTFKSSWTREVTGASTDTLKSGLTETITGTHKSTVSDAYDGEAKTVTIKATGGDVVITASGDMTLEANWVKKISRDLHWDSAPVRLTNTGVNVNFNGIATSSSGLANFNNLLQVSTNGARLEFFGFGYAFGLYATTQTLAQTGNKGYDIEMGEVALYFKLLTGFA*