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SCNpilot_cont_300_bf_scaffold_224_curated_14

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(19455..20831)

Top 3 Functional Annotations

Value Algorithm Source
Type VI secretion protein, VC_A0114 family n=1 Tax=Variovorax sp. CF313 RepID=J3CQU2_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 96.3
  • Coverage: 458.0
  • Bit_score: 889
  • Evalue 1.80e-255
Variovorax paradoxus strain MEDvA23 contig_4, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ36966.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 96.9
  • Coverage: 458.0
  • Bit_score: 889
  • Evalue 1.50e-255
type VI secretion protein; K11893 type VI secretion system protein ImpJ similarity KEGG
DB: KEGG
  • Identity: 96.7
  • Coverage: 458.0
  • Bit_score: 888
  • Evalue 7.40e-256

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1377
GTGACAGTTCGCAATCAGGGCGCTGGAAGAAACGGCGTTCATCCGCAGGCGTTGGCGAATAGGGTGGTGTGGTCAGAGGGCATGTACCTGAGGCCGCAGCATTTCCAGCAGCTCGAGCGTTACGTCGAGCAATACGTGACACGCCGCACTGCAGGCCTGCAAGGCGCTTATTGGGGATGGCTGCATCTCGAGATAGACCGCGACGCGTACGCGCTCGGCCGTGTGTCTCTGCTCGGCGGCGCGGGCGTGCTGCCCGACGGCACGCCGTTTTCCTTCGGCGCCGAAGATGCGCCGCTGCCTTATGAGGTACCCAACGACCTGACCGATGAACTCATCGTGCTCGCACTGCCGCTGCGCAGGCCCGGCAGCGAAGAAGTCATCTTTGCGGAAGACGAAGGCTCGGCAGCGCGCTTCGGCGTGATCGAGCGCGAGGTGAACGACGGCAACGCCGTCGCGCTGGGCCCTGCGGTGCTGCAGCTCGCCGCACCGCGCCTGCGCCTTGCGCGCGCGTCTTCGCTCACCGCCGAATGGCAGGCCATCGGCGCGGTGCGCGTGATCGAGCGCCGCACCGACCACAAGCTGGTGGTCGATGCCAACTACATTCCGCCGGTGCTCGATGCTTCCGCGCACACCATGCTGCGCAGCATGATCGCGGAGCTGCACGGCCTGCTCACGCAGCGCTCCGAGGCACTGGCCTCGCGGCTGTCGCAGCCGGGGCGCGGCGGCGTGAGCGAGGTGTCCGACTTCCTGCTGCTGGAGCTGGTCAATCGCTATCTCGCGCTCACCTGGCATGCGCAGCAGGCGGTGCAGGTGCACCCCGAGCAGCTCTTCACCGACTGGCTCAAGCTGGCCTGCCACCTGGCCACGCACACCTCGCCCACGCGGCGCCCGGTGCTGTGGCCGGTGTACGACCACGACAACCTCAACGAAAGCATTCGTCCGCTGATGGAAGAGCTGCGGCGCTCGCTGTCGGCCGTGCTCGAACAGAGCGCGATCGCGATCGAGCTCGAGGAGCGCAGCCACGGCGTGCGCGTGGGCCGCATGCCCGACCCGGTGCTGGTGCGCAATGCGGGCTTCGTGCTCGCGGTGCATGCCGACCTGCCGGCCGACGCCATCCAGCAGCGCTTCCCCACGCAGGTGAAGATCGGCTCGGTCGAGCGCATCCGCGACCTCGTGCAGCTGCAGCTGCCGGGCGTGACCGTGCGCCCGCTGCCGGTGGCGCCCAGGCAGATTCCGTACAACGCGGGCTACCACTATTTCGAACTCGACAAGAGCGGCGACATGTGGCGCCAACTCGAGAAATCGGGCGGCGTGGCGATGCACCTGGCCGGTGACTTTCCCGGGCTGGCCATGGAGTTCTGGGCCATCCGTCCGTGA
PROTEIN sequence
Length: 459
VTVRNQGAGRNGVHPQALANRVVWSEGMYLRPQHFQQLERYVEQYVTRRTAGLQGAYWGWLHLEIDRDAYALGRVSLLGGAGVLPDGTPFSFGAEDAPLPYEVPNDLTDELIVLALPLRRPGSEEVIFAEDEGSAARFGVIEREVNDGNAVALGPAVLQLAAPRLRLARASSLTAEWQAIGAVRVIERRTDHKLVVDANYIPPVLDASAHTMLRSMIAELHGLLTQRSEALASRLSQPGRGGVSEVSDFLLLELVNRYLALTWHAQQAVQVHPEQLFTDWLKLACHLATHTSPTRRPVLWPVYDHDNLNESIRPLMEELRRSLSAVLEQSAIAIELEERSHGVRVGRMPDPVLVRNAGFVLAVHADLPADAIQQRFPTQVKIGSVERIRDLVQLQLPGVTVRPLPVAPRQIPYNAGYHYFELDKSGDMWRQLEKSGGVAMHLAGDFPGLAMEFWAIRP*