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SCNpilot_cont_300_bf_scaffold_224_curated_15

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(20998..21513)

Top 3 Functional Annotations

Value Algorithm Source
type VI secretion protein n=1 Tax=Variovorax paradoxus RepID=UPI00037AA0F5 similarity UNIREF
DB: UNIREF100
  • Identity: 91.2
  • Coverage: 171.0
  • Bit_score: 315
  • Evalue 3.10e-83
type VI secretion lipoprotein, VC_A0113 family similarity KEGG
DB: KEGG
  • Identity: 88.9
  • Coverage: 171.0
  • Bit_score: 311
  • Evalue 1.80e-82
Type VI secretion lipoprotein, VC_A0113 family {ECO:0000313|EMBL:AGU47375.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 88.9
  • Coverage: 171.0
  • Bit_score: 311
  • Evalue 8.10e-82

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 516
ATGCATCGACGAAGCTTGCTGCAAGGCGCACTTGCAACCACACCGTTGCTCGCGGGCCTCGGTGGTTGCGCATCGACAGCCAAGTCCTTGCCCACGCCCTATGCCGTCACCGTGCGCATCGATGATGGCGTGAACCCCGACGGACGCGGCCAGGCCGCCCCGATCCTGGTGAAGGTCTTCGAACTGAAATCTTCCGGTAACTTCGAGACAGCAGACTACTTTGCACTGCAGGATCGCGATCGCGAGGCGCTGGCAGCGGAACTCGTGAACGCCGACCAGGCCATCATGCGCAGCGGCGACGAGCGCGTCTTCAAGCGCGAGGCGGGTCTCGACTCGCGCGCCATCGGCATCATCGCGGGTTATCGCAAGCTGGAAGCCGCGCGCTGGCGCATCGTGCTGCCGCTCAAGGAGCCAAAGCAAACAAACCTGTACAAAGTTTGGCAGTTCTCGCCGAGCGAGCAGGCCGTGCAGGTCGTGGTGCGCAAGAGTGGCCTCGAGGTGCTACCAAGTCGTTAA
PROTEIN sequence
Length: 172
MHRRSLLQGALATTPLLAGLGGCASTAKSLPTPYAVTVRIDDGVNPDGRGQAAPILVKVFELKSSGNFETADYFALQDRDREALAAELVNADQAIMRSGDERVFKREAGLDSRAIGIIAGYRKLEAARWRIVLPLKEPKQTNLYKVWQFSPSEQAVQVVVRKSGLEVLPSR*