ggKbase home page
Advanced Search
Search Help

SCNpilot_cont_300_bf_scaffold_214_curated_58

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(93860..98095)

Top 3 Functional Annotations

View all annotations
Value Algorithm Source
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 99.4
  • Coverage: 999.99
  • Bit_score: 2736
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta'; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] similarity KEGG
DB: KEGG
  • Identity: 98.4
  • Coverage: 999.99
  • Bit_score: 2706
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta' n=1 Tax=Variovorax sp. CF313 RepID=J2KW93_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 99.4
  • Coverage: 999.99
  • Bit_score: 2736
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Variovorax sp. CF313 → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 4236
ATGAAATCGCTACTCGACCTGTTCAAGCAATTCACGCCCGATGAGCATTTCGATGCCATCAAGATCGGCATGGCTTCGCCCGAGAAGATCCGTTCGTGGTCTTTCGGCGAGGTGAAGAAGCCCGAGACGATCAACTACCGCACGTTCAAGCCCGAGCGCGACGGCCTGTTCTGCGCCAAGATCTTCGGCCCCATCAAGGACTACGAGTGCCTGTGCGGCAAGTACAAGCGCTTGAAGCACCGCGGCGTGATCTGCGAGAAGTGCGGCGTTGAAGTCACGCAGACCAAGGTGCGTCGCGAGCGCATGGGTCACATCGACCTGGCCGCGCCCTGCGCCCACATCTGGTTCCTGAAGTCGCTGCCGTCGCGCCTGGGCCTCGTGCTCGACATGACGCTGCGCGACATCGAACGCGTGCTGTACTTCGAAGCCTACGTGATCACCGACCCCGGCATGACCCCGCTGAAGAAGTTCGGCATCATGTCCGAGGACGACTACGACGCGAAGCGCAAGGAATACGGCGACGAATTCATCGCCAAGATGGGCGCCGAAGGCATCAAGGACCTGCTCGAAGGCATCGAACTCGACAGCGAGATCGAACGCCTGCGCGGCGACCTGACCGGCTCCGAAGTCAAGGTCAAGAAGAACTCCAAGCGCCTGAAGGTGCTGGAAGCCTTCCGCAAGTCGGGCATCAAGCCCGAGTGGATGGTGCTCGACGTGCTGCCCGTGCTGCCGCCGGACCTGCGTCCGCTGGTGCCGCTGGACGGCGGCCGCTTCGCGACTTCCGACCTGAACGACCTGTATCGCCGCGTCATCAACCGCAATTCGCGTCTGCGCCGCCTGCTGGAGCTGAAGGCCCCGGAAATCATCGCGCGCAACGAAAAGCGGATGCTGCAGGAAGCTGTCGACTCGCTGCTGGACAACGGCCGCCGTGGCAAGGCCATGACGGGCGCCAACAAGCGCGCGCTGAAGTCGCTGGCGGACATGATCAAGGGCAAGAGCGGCCGCTTCCGCCAGAATCTGCTGGGCAAGCGCGTCGACTACTCGGGCCGTTCGGTCATCGTGGTGGGCCCGACGCTCAAGCTGCACCAGTGCGGCCTGCCGAAGCTGATGGCGCTCGAGCTGTTCAAGCCTTTCATCTTCTCGCGCCTCGAAGCCATGGGCATCGCGACCACGATCAAGGCTGCCAAGAAGGAAGTCGAATCGGGTACGCCGGTGGTCTGGGACATCCTGGAAGAGGTCATCAAGGAGCACCCGGTCATGCTGAACCGCGCTCCTACGCTGCACCGCCTGGGCATTCAGGCCTTCGAACCGATCCTGATCGAAGGCAAGGCCATCCAGCTGCACCCGCTCGTCTGCGCGGCATTCAACGCCGACTTCGACGGCGACCAGATGGCCGTCCACGTGCCGCTGTCGGTGGAAGCGCAGATGGAAGCCCGCACGCTGATGCTGGCCTCCAACAACGTGCTGTTCCCGGCTTCGGGCGAACCGTCGATCGTTCCTTCGCAGGACGTAGTGCTGGGTCTGTACTACACGACCCGCGACCGCATCAACGGCAAGGGCGAGGGCCTGATCTTCTCCGACATCGGTGAAGTGCAGCGCGCGCTCGACGCCAACGAAGTCGAGCTGACCGCCCGCGTGGCGGTGCGCATCACGGAGTACACCAAGAACAAGGAAACCGGCGAATTCACGCCGTCGACCTCGCTCGTGGACACCACCGTGGGCCGCGCGCTGCTGTCCGAGATCCTGCCGAAGGGCCTGCCGTTCTCGAACATCAACAAGGCGCTGAAGAAGAAGGAAATCTCCAAGCTCATCAACGTCTCGTTCCGCAAGTGCGGCCTGAAAGAGACCGTCGTGTTCGCCGACAAGCTGCTGCAAAACGGCTTCCGCCTGGCAACCAAGGCCGGTATCTCGATCGCCATCGACGACATGCTGGTGCCCGCTGAAAAGCACGGCATCATCGATCGCTCCGCCAAGGAAGTGAAGGAGATCGAGCAGCAGTATGTGTCGGGTCTGGTGACCTCCGGCGAACGCTACAACAAGGTGGTGGACATCTGGGGCAAGGCCGGCGACGAAGTGTCGAAGGTCATGATGGCCAAGCTGTCGAAGCAGAAGGTCATCGACCGCCATGGCAAGGAAGTCGAGCAGGAGTCCTTCAACTCGATCTACATGATGGCCGACTCGGGCGCCCGCGGTTCCGCGGCCCAGATTCGCCAGGTGGCCGGTATGCGGGGCCTGATGGCCAAGCCGGACGGCTCGATCATCGAGACGCCCATTACCGCGAACTTCCGCGAAGGCCTGAACGTGCTGGAGTACTTCATCTCCACCCACGGTGCCCGTAAGGGTCTGGCCGACACGGCGCTGAAGACGGCGAACTCGGGTTACCTGACCCGTCGTCTGGTCGACGTGACGCAAGACCTGGTCGTGACCGAGCAGGACTGCGGCACGCACGGCGGCTACCTGATGCGCGCCATCGTCGAAGGCGGTGAAGTCATCGAATCGCTGCGCGACCGTATCCTCGGCCGTTCGGCTGCCGACGACGTGCTGCACCCGGAAAACCGCTCGGTGCTGCTGAAGGCAGGCGAGATGTTCGACGAAGACAACATCGAAGCACTGGAAGCCCAGGGCGTCGACGAAGTCAAGGTCCGCACCGCGCTGACCTGCGAAACCCGCTTCGGCATCTGCGCGACCTGCTACGGCCGCGACCTGGGCCGCGGCGGCCTGATCAACATCGGCGAAGCCGTCGGTGTGATCGCCGCGCAGTCCATCGGTGAACCGGGCACGCAGCTGACGATGCGTACCTTCCACATCGGTGGTGCCGCTTCGCGCGCTGCCATCGCCTCGAGCGTGGAAGCCAAGTCGAACGGTTCGATCGGTTTCAACGCCACGATGCGCTACGTGACCAACAGCAAGGGCGAGCTGGTCGTGATTTCGCGTTCGGGCGAGATCGTCATCCATGACGAGCACGGTCGCGAGCGCGAACGTCACAAGGTGCCGTACGGCGCCACGCTGACGGTCAAGGCAGACCAGCAGATCAAGGCCGGCCACGTGCTCGCCAACTGGGACCCGCTGACCCGCCCGATCATTACCGAGTTCGCCGGCAAGACGCAGTTCGAAAACGTCGAGGAAGGCCTCACGGTTGCGAAGCAGGTGGACGAAGTGACCGGTCTGTCGACCCTGGTCGTGATCGACCCGAAGCGCCGCGGCGCTGCCAAGGTCGTTCGCCCGCAGGTGAAGCTGATCGACGCACAAGGCCAGGAAGTGAAGATTCCGGGCACCGATCACTCGGTGACCATCGGCTTCCCGATCGGTGCGCTGGTCCAGATCCGCGACGGCCAGGACGTGGGCCCCGGCGAAGTGCTGGCGCGTATTCCGGTCGAAGGCCAGAAGACCCGCGACATTACCGGCGGTCTGCCGCGCGTTGCCGAGCTGTTCGAAGCCCGCTCGCCGAAGGACAAGGGCATGCTGGCCGAAATGACCGGCACGGTGTCGTTCGGTAAGGAGACCAAGGGCAAGATCCGCCTGCAGATCACCGATCCGGAAGGCACGGTCTGGGAAGACCTCGTGCCGAAGGAAAAGAACATCCTGGTGCACGAAGGCCAGGTGGTGAACAAGGGCGAATCCGTGGTCGACGGCCCGGCTGACCCGCAGGACATCCTGCGCCTGCTGGGTTCGGAAGAACTGGCGCGCTACATCGTGGACGAAGTGCAGGACGTGTACCGCCTGCAGGGTGTGAAGATCAACGACAAGCACATCGAGGTGATCGTTCGCCAGATGCTGCGCCGCGTCGTGGTCGACAACATCGGCGAGACCGGCTACATCTCCGGCGAACAGGTCGAACGCAGCGAAATGCTCAACACCAACGACGCCCTGCGCGCCGAAGGCAAGATCCCCGCGACGTTCACCAACCTGCTGCTGGGTATCACGAAGGCATCGCTGTCGACCGACTCGTTCATCTCCGCCGCTTCGTTCCAGGAAACGACGCGCGTGCTGACCGAAGCCGCGATCATGGGCAAGCGCGACGAGCTGCGCGGCCTGAAGGAAAACGTCATCGTCGGCCGCCTGATTCCCGCGGGCACCGGCATGGCGTACCACCAGGCACGCAAGGTCAAGGACGCCATGGACGAGGCCGAGCGCCGCGCCATCGCCGAATCGGAAGCCGCCGAACTGGCCGGCTCCGGTGACAGCGATGCGGCAACCAGCACGGTCGACGCCAGCGAAGGCGCCGCGACCGAATAA
PROTEIN sequence
Length: 1412
MKSLLDLFKQFTPDEHFDAIKIGMASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAKIFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSLPSRLGLVLDMTLRDIERVLYFEAYVITDPGMTPLKKFGIMSEDDYDAKRKEYGDEFIAKMGAEGIKDLLEGIELDSEIERLRGDLTGSEVKVKKNSKRLKVLEAFRKSGIKPEWMVLDVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQEAVDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPTLKLHQCGLPKLMALELFKPFIFSRLEAMGIATTIKAAKKEVESGTPVVWDILEEVIKEHPVMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQMEARTLMLASNNVLFPASGEPSIVPSQDVVLGLYYTTRDRINGKGEGLIFSDIGEVQRALDANEVELTARVAVRITEYTKNKETGEFTPSTSLVDTTVGRALLSEILPKGLPFSNINKALKKKEISKLINVSFRKCGLKETVVFADKLLQNGFRLATKAGISIAIDDMLVPAEKHGIIDRSAKEVKEIEQQYVSGLVTSGERYNKVVDIWGKAGDEVSKVMMAKLSKQKVIDRHGKEVEQESFNSIYMMADSGARGSAAQIRQVAGMRGLMAKPDGSIIETPITANFREGLNVLEYFISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVVTEQDCGTHGGYLMRAIVEGGEVIESLRDRILGRSAADDVLHPENRSVLLKAGEMFDEDNIEALEAQGVDEVKVRTALTCETRFGICATCYGRDLGRGGLINIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAIASSVEAKSNGSIGFNATMRYVTNSKGELVVISRSGEIVIHDEHGRERERHKVPYGATLTVKADQQIKAGHVLANWDPLTRPIITEFAGKTQFENVEEGLTVAKQVDEVTGLSTLVVIDPKRRGAAKVVRPQVKLIDAQGQEVKIPGTDHSVTIGFPIGALVQIRDGQDVGPGEVLARIPVEGQKTRDITGGLPRVAELFEARSPKDKGMLAEMTGTVSFGKETKGKIRLQITDPEGTVWEDLVPKEKNILVHEGQVVNKGESVVDGPADPQDILRLLGSEELARYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVVVDNIGETGYISGEQVERSEMLNTNDALRAEGKIPATFTNLLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAYHQARKVKDAMDEAERRAIAESEAAELAGSGDSDAATSTVDASEGAATE*