ggKbase home page

SCNpilot_cont_300_bf_scaffold_214_curated

Search features with annotation key words

Displaying items 31-60 of 66 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_214_curated_31
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33308..34732)
DNA (1425bp) protein (475aa)
type I secretion protein TolC n=1 Tax=Variovorax paradoxus RepID=UPI00037F6561
TolC family type I secretion outer membrane protein; K12543 outer membrane protein LapE
Type I secretion outer membrane protein, TolC family {ECO:0000313|EMBL:ADU39199.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_214_curated_32
Pantoea sp. PSNIH1, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34738..54579)
DNA (19842bp) protein (6614aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003811C8F
Uncharacterized protein {ECO:0000313|EMBL:AIX49202.1}; TaxID=1484158 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. PSNIH1.;"
RSp1180; hemagglutinin/hemolysin-like protein
SCNpilot_cont_300_bf_scaffold_214_curated_33
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54901..57432)
DNA (2532bp) protein (844aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WJH5_DELAC
TonB-dependent siderophore receptor family protein {ECO:0000313|EMBL:KFJ14189.1}; TaxID=80866 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (Pseudomonas acidovorans) (Comamonas acidovorans).;"
TonB-dependent siderophore receptor
SCNpilot_cont_300_bf_scaffold_214_curated_34
Advenella mimigardefordensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(57542..58528)
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2XQ88_DELAC
Uncharacterized protein {ECO:0000313|EMBL:AHG64232.1}; TaxID=1247726 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella mimigardefordensis DPN7.;"
anti-FecI sigma factor FecR
SCNpilot_cont_300_bf_scaffold_214_curated_35
Advenella mimigardefordensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(58525..59052)
DNA (528bp) protein (176aa)
ECF subfamily RNA polymerase sigma-24 factor n=1 Tax=Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001) RepID=I3UC89_ADVKW
Putative RNA polymerase sigma factor FecI {ECO:0000313|EMBL:AHG64233.1}; TaxID=1247726 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella mimigardefordensis DPN7.;"
ECF subfamily RNA polymerase sigma-24 factor
SCNpilot_cont_300_bf_scaffold_214_curated_36
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(59172..59924)
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F5D539
Uncharacterized protein {ECO:0000313|EMBL:KFG70131.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
hypothetical protein; K10094 nickel transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_214_curated_37
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(59939..62374)
DNA (2436bp) protein (812aa)
hypothetical protein n=1 Tax=Pseudomonas pyrrocinia RepID=UPI0003120979
Ferric siderophore receptor {ECO:0000313|EMBL:EAP72469.1}; TaxID=342110 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum UW551.;"
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_cont_300_bf_scaffold_214_curated_38
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62512..63525)
DNA (1014bp) protein (338aa)
Fe2+-dicitrate sensor, membrane component n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6SX53_JANMA
Cupriavidus basilensis strain 4G11 chromosome secondary, complete sequence {ECO:0000313|EMBL:AJG23746.1}; TaxID=68895 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis.;"
fecR2; Fe2+-dicitrate sensor, membrane protein
SCNpilot_cont_300_bf_scaffold_214_curated_39
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(63515..64024)
DNA (510bp) protein (170aa)
Uncharacterized conserved protein n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6SX54_JANMA
fecI2; hypothetical protein; K03088 RNA polymerase sigma-70 factor, ECF subfamily
Uncharacterized conserved protein {ECO:0000313|EMBL:ABR90331.1}; TaxID=375286 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis).;"
SCNpilot_cont_300_bf_scaffold_214_curated_40
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

64325..66682
DNA (2358bp) protein (786aa)
hypothetical protein n=1 Tax=Janthinobacterium sp. CG3 RepID=UPI00034DC193
TonB-dependent receptor {ECO:0000313|EMBL:KHA76654.1}; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;"
putative iron transport receptor protein; K02014 iron complex outermembrane recepter protein
SCNpilot_cont_300_bf_scaffold_214_curated_41
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

66780..67421
DNA (642bp) protein (214aa)
ATP-binding protein n=1 Tax=Comamonas sp. B-9 RepID=UPI0003958AD3
ATP-binding protein {ECO:0000313|EMBL:KGF83481.1}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
putative ABC transporter ATP-binding protein
SCNpilot_cont_300_bf_scaffold_214_curated_42
Acinetobacter brisouii, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

67418..68212
DNA (795bp) protein (265aa)
ABC transporter permease n=1 Tax=Comamonas sp. B-9 RepID=UPI000395AC99
ABC transporter permease {ECO:0000313|EMBL:KJV40290.1}; TaxID=396323 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacter brisouii.;"
YbbM seven transmembrane helix protein
SCNpilot_cont_300_bf_scaffold_214_curated_43
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

68257..68961
DNA (705bp) protein (235aa)
aspartate racemase; K01779 aspartate racemase [EC:5.1.1.13]
Aspartate racemase n=1 Tax=Variovorax sp. CF313 RepID=J2KAQ0_9BURK
Aspartate racemase {ECO:0000313|EMBL:EJL77325.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_214_curated_44
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(68972..69274)
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000362B8DC
Variovorax paradoxus strain MEDvA23 contig_10, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35271.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_300_bf_scaffold_214_curated_45
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(69289..73572)
DNA (4284bp) protein (1428aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037EEF3A
Flagellar motor protein MotB {ECO:0000313|EMBL:EZH76759.1}; TaxID=1453503 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes AD6.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_214_curated_46
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(73569..81668)
DNA (8100bp) protein (2700aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036BCD6C
Variovorax paradoxus strain MEDvA23 contig_10, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35270.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_214_curated_47
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

81899..82753
DNA (855bp) protein (285aa)
AraC family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00036608EC
Variovorax paradoxus strain MEDvA23 contig_10, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35269.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
two component transcriptional regulator, AraC family
SCNpilot_cont_300_bf_scaffold_214_curated_48
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

82764..85055
DNA (2292bp) protein (764aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003787367
integral membrane sensor signal transduction histidine kinase
SCNpilot_cont_300_bf_scaffold_214_curated_49
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

85132..85542
DNA (411bp) protein (137aa)
phenylacetic acid degradation protein n=1 Tax=Variovorax paradoxus RepID=UPI000380862A
Variovorax paradoxus strain MEDvA23 contig_7, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ36273.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
thioesterase superfamily protein
SCNpilot_cont_300_bf_scaffold_214_curated_50
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(85505..86539)
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6R4_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU36020.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_214_curated_51
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(86559..86744)
DNA (186bp) protein (62aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036BA36E
Variovorax paradoxus strain MEDvA23 contig_119, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ17669.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_214_curated_52
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(86873..87775)
DNA (903bp) protein (301aa)
Phytanoyl-CoA dioxygenase (PhyH) family protein n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UVM5_PSEUP
phytanoyl-CoA dioxygenase (PhyH) family protein
Phytanoyl-CoA dioxygenase (PhyH) family protein {ECO:0000313|EMBL:AER55142.1}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
SCNpilot_cont_300_bf_scaffold_214_curated_53
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(87979..88680)
DNA (702bp) protein (234aa)
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Variovorax sp. CF313 RepID=J2KW98_9BURK
Variovorax paradoxus strain MEDvA23 contig_29, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31890.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
response regulator receiver protein
SCNpilot_cont_300_bf_scaffold_214_curated_54
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(88770..91040)
DNA (2271bp) protein (757aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation n=1 Tax=Variovorax sp. CF313 RepID=J2TFZ0_9BURK
multi-sensor signal transduction histidine kinase
SCNpilot_cont_300_bf_scaffold_214_curated_55
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(91097..91690)
DNA (594bp) protein (198aa)
signal peptide protein n=1 Tax=Variovorax paradoxus RepID=UPI00035EA739
Variovorax paradoxus strain MEDvA23 contig_29, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31892.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_214_curated_56
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(91719..93206)
DNA (1488bp) protein (496aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00274011};; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
sun protein; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
Ribosomal RNA small subunit methyltransferase RsmB n=1 Tax=Variovorax sp. CF313 RepID=J2KAL9_9BURK
SCNpilot_cont_300_bf_scaffold_214_curated_57
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(93167..93757)
DNA (591bp) protein (197aa)
lema family protein n=1 Tax=Variovorax paradoxus RepID=UPI0003809667
Uncharacterized protein {ECO:0000313|EMBL:EJL77294.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
lema family protein; K03744 LemA protein
SCNpilot_cont_300_bf_scaffold_214_curated_58
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(93860..98095)
DNA (4236bp) protein (1412aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
DNA-directed RNA polymerase subunit beta'; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta' n=1 Tax=Variovorax sp. CF313 RepID=J2KW93_9BURK
SCNpilot_cont_300_bf_scaffold_214_curated_59
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(98117..102241)
DNA (4125bp) protein (1375aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
DNA-directed RNA polymerase subunit beta; K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta n=2 Tax=Bacteria RepID=J2TFY6_9BURK
SCNpilot_cont_300_bf_scaffold_214_curated_60
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(102492..102866)
DNA (375bp) protein (125aa)
50S ribosomal protein L7/L12 n=2 Tax=Variovorax paradoxus RepID=RL7_VARPS
rplL; 50S ribosomal protein L7/L12
50S ribosomal protein L7/L12 {ECO:0000255|HAMAP-Rule:MF_00368}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
Displaying items 31-60 of 66 in total

View Taxonomy