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SCNpilot_cont_300_bf_scaffold_214_curated_31

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(33308..34732)

Top 3 Functional Annotations

Value Algorithm Source
type I secretion protein TolC n=1 Tax=Variovorax paradoxus RepID=UPI00037F6561 similarity UNIREF
DB: UNIREF100
  • Identity: 71.0
  • Coverage: 473.0
  • Bit_score: 621
  • Evalue 5.50e-175
TolC family type I secretion outer membrane protein; K12543 outer membrane protein LapE similarity KEGG
DB: KEGG
  • Identity: 64.8
  • Coverage: 466.0
  • Bit_score: 561
  • Evalue 2.10e-157
Type I secretion outer membrane protein, TolC family {ECO:0000313|EMBL:ADU39199.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 64.8
  • Coverage: 466.0
  • Bit_score: 561
  • Evalue 9.50e-157

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1425
GTGAAGGCGCGTACCACGCTCCCTGCGCTTGCGTGGCTGGCCCTGGCCGCCGCGGCGGGCCCGGTCCATGCGGACGACGACGGCGGCCTGAAGCTGGCGCGCCGGCTCGCGCCGAGTTCGCTGGCCAGGGAACTCGAGCTGAAGCCGGGGCGGCCGCTGCCGCAGGCGCAGGCCAGCACGCAGCCGTTGACGCTGAACGAGGCGGTGCGCCAGTCGGTGGCGCGCCATCCGTCGATCTCCGATGCGATCTCCACGCTGGCGCAGCAGGCCGGCGGGGTCGACGTGGCGCGCGCGGGCTACTACCCGCAGGTGCGCGTGGGCGTGGGCGGCGGCACCAGCAACGCGCCAGCGTCGCAGGGCGGCAGCACCGGCACCGTGGCCTCGGCCTCGGTCTCGCAGATGCTCTACGACTTCGGCAAGGTCGGCGGCGCGGTGGCGCAGTCGCAGGCCCTGGTGCAGCGCCAGCAGGCGGCCATCCTCAAGCAGATCGACGCGGTGGCGCAGCAGGCGGCCGAGGCCGTGGTGATGGCGCACCGCTACCAGTCGCTGCTGGCCATCGCGCAGGACCAGGTGCAGGCTGTGCAGGCGGTGCTCGAGACCGCGCGGCTGCGCGCCAACGCGGGGCTCAGCACCAAGGCCGACCCGATCCAGGCCGAGTCGCGCGTGGACAGCGCGCGCGCCAATCTTCTGCAGGTGAAGTCGCAGCTGGCGCAGTGGCGCGAGCGCCTGGGCACGCTGCTGGGCCCCGGCGTGGTGCCGCCCGAGCTGGCGCCGTTGCCCGACGATCTGGCGCGCGCCCTGAGCGTGGACGCGCAGCCCGACGCCAGCCTGCTGCCCGATGTGCTCGCGGCCGAGGCCGAGCGCCGCGCCGCCTCGGCCCAGCTGGAGGTGGCGCGCGCCAACCGCTATCCCACGCTCACCGTGGACGCCGCCGTCAACAAGGCCATGGGCGGCATCAACCCCGCCACGCTGGAGCGCAACGGCACCTACCACACGGTCATGCTGAACCTCACCAGCGTGATCTACCAAGGCGGCGCGCTCGACGCGCAGGTGCGCGCGGCCACCGCCGCCGAGGACGCCGCGCGCATGCGCATCGAGACCGCGCGGCTCAACGCCGGCGACCAGGCGCGCAACTACCGCGAGCAGGTCGTCGGCGCGCAGGCGCGCCTGGGCGTGCTGGCCGACCGGCGGCGCAGCATCGTGGAGGCGCGCGACCTGTACCGCGAGCAGTACACGCTGGGCACGCGCTCCATCCTCGACCTGCTCAACGCCGAGCAGGAGATCTACCAGGCCGCCGCCGAGCAGGAGGCCGTGGTGCACGACCTCTGGGCCAGCCGCGTCGGCTACATCGGCGCCACGGGCCAGGCCCGCGCGTTCTACGGGCTGGACAACACCACCGTCCAGGGCATGGAGCTGCTGCCATGA
PROTEIN sequence
Length: 475
VKARTTLPALAWLALAAAAGPVHADDDGGLKLARRLAPSSLARELELKPGRPLPQAQASTQPLTLNEAVRQSVARHPSISDAISTLAQQAGGVDVARAGYYPQVRVGVGGGTSNAPASQGGSTGTVASASVSQMLYDFGKVGGAVAQSQALVQRQQAAILKQIDAVAQQAAEAVVMAHRYQSLLAIAQDQVQAVQAVLETARLRANAGLSTKADPIQAESRVDSARANLLQVKSQLAQWRERLGTLLGPGVVPPELAPLPDDLARALSVDAQPDASLLPDVLAAEAERRAASAQLEVARANRYPTLTVDAAVNKAMGGINPATLERNGTYHTVMLNLTSVIYQGGALDAQVRAATAAEDAARMRIETARLNAGDQARNYREQVVGAQARLGVLADRRRSIVEARDLYREQYTLGTRSILDLLNAEQEIYQAAAEQEAVVHDLWASRVGYIGATGQARAFYGLDNTTVQGMELLP*