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SCNpilot_cont_300_bf_scaffold_214_curated_60

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(102492..102866)

Top 3 Functional Annotations

Value Algorithm Source
50S ribosomal protein L7/L12 n=2 Tax=Variovorax paradoxus RepID=RL7_VARPS similarity UNIREF
DB: UNIREF100
  • Identity: 95.2
  • Coverage: 125.0
  • Bit_score: 220
  • Evalue 1.30e-54
rplL; 50S ribosomal protein L7/L12 similarity KEGG
DB: KEGG
  • Identity: 95.2
  • Coverage: 125.0
  • Bit_score: 220
  • Evalue 4.00e-55
50S ribosomal protein L7/L12 {ECO:0000255|HAMAP-Rule:MF_00368}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.2
  • Coverage: 125.0
  • Bit_score: 220
  • Evalue 1.80e-54

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 375
ATGGCATTCGATAAAGACGCATTTCTGACCGCGCTCGACAGCATGACGGTCCTGGAACTCAACGACCTGGTCAAGGCCATCGAAGAGAAGTTCGGCGTGAGCGCCGCTGCAATGGCCGCTCCCGCAGCTGGCGGCGGCGCCGCCGCTCCGGCCGCTGAAGAGAAGACCGAATTCAACGTCGTGCTGGTCGATGCCGGCGCGAACAAGGTTTCGGCGATCAAGGCAGTGCGCGAAATCACCGGCCTGGGCCTCAAGGAAGCCAAGGACCTGGTGGAAGCCGCTCCCAAGGCTGTCAAGGAAGGCCTGTCGAAGGCTGACGCTGAAGCCGCCAAGAAGAAGCTGGAAGATGCCGGCGCCAAGGTGGAACTGAAGTAA
PROTEIN sequence
Length: 125
MAFDKDAFLTALDSMTVLELNDLVKAIEEKFGVSAAAMAAPAAGGGAAAPAAEEKTEFNVVLVDAGANKVSAIKAVREITGLGLKEAKDLVEAAPKAVKEGLSKADAEAAKKKLEDAGAKVELK*