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SCNpilot_cont_300_bf_scaffold_190_curated_1

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(1..1698)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Variovorax sp. CF313 RepID=J3CT07_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 96.1
  • Coverage: 568.0
  • Bit_score: 1055
  • Evalue 0.0
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 96.1
  • Coverage: 568.0
  • Bit_score: 1055
  • Evalue 0.0
RNA polymerase sigma-70 subunit RpoD; K03086 RNA polymerase primary sigma factor similarity KEGG
DB: KEGG
  • Identity: 94.2
  • Coverage: 568.0
  • Bit_score: 1034
  • Evalue 0.0

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Taxonomy

Variovorax sp. CF313 → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1698
ATGCCCAGTTCAAAGAAGCCTGCTCCTTCACTTGCCAAAAGCGTCGCCACCAAGCCCGCAGCAGAAAAACCGTTGAAAGCCGGCCAGTCGCCGGCAACTAAGACGGGTGCCGCCGCATCCAAATCGGCAGCCGCAACGAAAGTGAAAACCGTGCCCACGAAATCGACCTCTCTCGACGATCCCAAAAAAGCCGCAGCCCCCGCCGCCAAGAAAGTCGGGCGCCCGCCCAAGGCCGCCGGCGCCGCCACCACCGGCGCCAAGCGCGGCCGCAAGCCCAAGGCTGACAAGGACGCGCCCGAGAGCGACATCGACCTGTCGGACATCGAGGACGACCTGGCCGGCGACGAACCCGCGGCAACCACGACCACCGAAGAGAAGGTCAAACCGCTGCGCATGAAGATCAGCAAGGCGAAGGAACGCGCCTTGATGAAGGAGTTCGGCCTCGACGAGACCGTGCTCTCCGAAGAAGACCTGGCCAAGCGCCGCTCGCGCCTGAAGACCCTGATCACGCTGGGCAAGACCCGCGGCTACCTCACGCACGGCGAAATCTCCGACCACTTGCCCGACAAGCTGGTCGACGCCGAGACCATGGAAGTCGTGGTCACCATGCTCAACGACATGGGCGTGGCGGTGTACGAGCAGACGCCCGACGCCGAAACCCTGCTGCTGAACAACACCGCGCCCACCGCCACCACGGTGGAAGAAGCCGAGGAAGAAGCCGAAGCGGCCCTGTCCACGGTGGACAGCGAATTCGGCCGCACCACCGACCCCGTGCGCATGTACATGCGCGAAATGGGCACGGTCGAGCTGCTGACCCGCGAAGGCGAAATCGAAATCGCCAAGCGCATCGAAGGCGGCCTGATGGCCATGATGGAAGCCATCTCGGCCTCCCCCGCCACCATCGCTGCGATCCTCGAGATGGCCGCCACCATCCGCGAAGGCAAGGTCGTCATCTCGACCATCGTCGACGGCTTCTCGAACCCCAACGAGGCCGACGACTACGTGGCCGAGGAAGACTTCGACGAATTCGACGAAGAAGACGACGACGACGGCAAGGGCGGCTCCAAGGCCCTGACCAAGAAGCTCGAAGAACTCAAGCGCGACGCGCTCGAGCGCTTCGACCGCATCGCCAGCCTGTTCGAGAAGGTCCACAAGATCTACGACAAGGAAGGCTACGGCACGCCGGCGTACGTCAAGGCGCAGGAGGCCATGTCGGAAGAGCTGATGACCATCCGCTTCACCGCCAAGACCATCGAGAAGCTGTGCGACCTGGTGCGCACGCAGGTCGACGACGTGCGCAAGAAGGAGCGCGAACTGCGCCGCATCATCGTGGACAAGTGCGGCTTCCCGCAGGAAGAGTTCATCCGCGACTTCAGCGGTTTCGACAAAAACGGCAACGTCGTCGCGTCCAACCTGCTGAACCTGAAGTGGGTCGAGAAGCAGGCCGCCGCCGGCAAGCCCTGGAGCGCCGTGCTCGCCCGCAACATTCCGCCGGTGCAGGAACTGCAGCAGCGCCTGACCGACATCCAGTCGCGCGTGGTGGTGCCGCTCACGCAGCTCAAGGACATCAACAAGCGCATGAACGAAGGCGAATCGTCTTCGCGCGACGCCAAGAAGGAAATGATCGAGGCCAACCTGCGCCTCGTGATCTCCATCGCCAAGAAGTACACCAACCGCGGCCTGCAGTTCCTGGACCTG
PROTEIN sequence
Length: 566
MPSSKKPAPSLAKSVATKPAAEKPLKAGQSPATKTGAAASKSAAATKVKTVPTKSTSLDDPKKAAAPAAKKVGRPPKAAGAATTGAKRGRKPKADKDAPESDIDLSDIEDDLAGDEPAATTTTEEKVKPLRMKISKAKERALMKEFGLDETVLSEEDLAKRRSRLKTLITLGKTRGYLTHGEISDHLPDKLVDAETMEVVVTMLNDMGVAVYEQTPDAETLLLNNTAPTATTVEEAEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEGGLMAMMEAISASPATIAAILEMAATIREGKVVISTIVDGFSNPNEADDYVAEEDFDEFDEEDDDDGKGGSKALTKKLEELKRDALERFDRIASLFEKVHKIYDKEGYGTPAYVKAQEAMSEELMTIRFTAKTIEKLCDLVRTQVDDVRKKERELRRIIVDKCGFPQEEFIRDFSGFDKNGNVVASNLLNLKWVEKQAAAGKPWSAVLARNIPPVQELQQRLTDIQSRVVVPLTQLKDINKRMNEGESSSRDAKKEMIEANLRLVISIAKKYTNRGLQFLDL