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SCNpilot_cont_300_bf_scaffold_190_curated

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Displaying items 1-30 of 278 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_190_curated_1
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1698)
DNA (1698bp) protein (566aa)
RNA polymerase sigma factor RpoD n=1 Tax=Variovorax sp. CF313 RepID=J3CT07_9BURK
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
RNA polymerase sigma-70 subunit RpoD; K03086 RNA polymerase primary sigma factor
SCNpilot_cont_300_bf_scaffold_190_curated_2
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1995..4022)
DNA (2028bp) protein (676aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|SAAS:SAAS00051044}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|SAAS:SAAS00051045};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
DNA primase; K02316 DNA primase [EC:2.7.7.-]
DNA primase n=1 Tax=Variovorax sp. CF313 RepID=J2TGQ3_9BURK
SCNpilot_cont_300_bf_scaffold_190_curated_3
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4105..5052
DNA (948bp) protein (316aa)
Putative membrane protein n=1 Tax=Variovorax sp. CF313 RepID=J2KX89_9BURK
Putative membrane protein {ECO:0000313|EMBL:EJL77618.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
ribonuclease bn
SCNpilot_cont_300_bf_scaffold_190_curated_4
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5000..5758)
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CSI9_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL77619.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_cont_300_bf_scaffold_190_curated_5
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5889..6440)
DNA (552bp) protein (184aa)
Phasin family protein n=1 Tax=Variovorax sp. CF313 RepID=J2KBL0_9BURK
Phasin family protein {ECO:0000313|EMBL:EJL77620.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
phasin family protein
SCNpilot_cont_300_bf_scaffold_190_curated_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6623..7549
DNA (927bp) protein (309aa)
Histone deacetylase superfamily protein n=1 Tax=Variovorax paradoxus B4 RepID=T1X7P5_VARPD
histone deacetylase superfamily protein
Histone deacetylase superfamily protein {ECO:0000313|EMBL:AGU48962.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_190_curated_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7546..7989
DNA (444bp) protein (148aa)
thioesterase superfamily protein; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
thioesterase n=1 Tax=Variovorax paradoxus RepID=UPI00037E8F4F
Thioesterase superfamily protein {ECO:0000313|EMBL:ACS18419.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_190_curated_8
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8057..8464)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2TGQ6_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL77622.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_190_curated_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8516..8749)
DNA (234bp) protein (78aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037F8FD0
Variovorax paradoxus strain MEDvA23 contig_20, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33614.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
csbd family protein
SCNpilot_cont_300_bf_scaffold_190_curated_10
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8942..10162
DNA (1221bp) protein (407aa)
Nicotinate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00570, ECO:0000256|RuleBase:RU003838}; Short=NAPRTase {ECO:0000256|HAMAP-Rule:MF_00570};; EC=6.3.4.21 {ECO:0000256|HAMAP-Rule:MF_00570, ECO:0000256|RuleBase:RU003838};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
nicotinate phosphoribosyltransferase; K00763 nicotinate phosphoribosyltransferase [EC:2.4.2.11]
Nicotinate phosphoribosyltransferase n=1 Tax=Variovorax sp. CF313 RepID=J3CSJ2_9BURK
SCNpilot_cont_300_bf_scaffold_190_curated_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10211..11623
DNA (1413bp) protein (471aa)
Putative transmembrane protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V8T4_VARPE
transmembrane protein
Putative transmembrane protein {ECO:0000313|EMBL:ADU36156.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_190_curated_12
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11653..12639
DNA (987bp) protein (329aa)
Lactate dehydrogenase-like oxidoreductase n=1 Tax=Variovorax sp. CF313 RepID=J3CT13_9BURK
Lactate dehydrogenase-like oxidoreductase {ECO:0000313|EMBL:EJL77626.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein
SCNpilot_cont_300_bf_scaffold_190_curated_13
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12664..14031
DNA (1368bp) protein (456aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2TGQ9_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL77627.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein; K09760 DNA recombination protein RmuC
SCNpilot_cont_300_bf_scaffold_190_curated_14
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14028..15191
DNA (1164bp) protein (388aa)
MFS transporter n=1 Tax=Variovorax paradoxus RepID=UPI00037CDB0B
Arabinose efflux permease family protein {ECO:0000313|EMBL:EJL77628.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative transporter, MSF-type
SCNpilot_cont_300_bf_scaffold_190_curated_15
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15304..16833
DNA (1530bp) protein (510aa)
DSBA oxidoreductase n=1 Tax=Variovorax paradoxus RepID=UPI00036F7530
DSBA oxidoreductase {ECO:0000313|EMBL:AIR52660.1}; TaxID=562971 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans C54.;"
Permeases of the major facilitator superfamily
SCNpilot_cont_300_bf_scaffold_190_curated_16
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16917..17366
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000377EE86
Uncharacterized protein {ECO:0000313|EMBL:EMG55224.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_190_curated_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17375..18052
DNA (678bp) protein (226aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000369BE4A
TetR family transcriptional regulator
Regulatory protein TetR {ECO:0000313|EMBL:ADU36161.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_190_curated_18
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18059..18922)
DNA (864bp) protein (288aa)
TIGR00730 family protein n=1 Tax=Variovorax sp. CF313 RepID=J3CSJ6_9BURK
TIGR00730 family protein {ECO:0000313|EMBL:EJL77629.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein; K06966
SCNpilot_cont_300_bf_scaffold_190_curated_19
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19042..19596)
DNA (555bp) protein (185aa)
Elongation factor P n=1 Tax=Variovorax sp. CF313 RepID=J2KBL6_9BURK
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
elongation factor P; K02356 elongation factor P
SCNpilot_cont_300_bf_scaffold_190_curated_20
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19750..20820)
DNA (1071bp) protein (357aa)
PP_1857 family protein n=1 Tax=Variovorax sp. CF313 RepID=J3CT15_9BURK
PP_1857 family protein {ECO:0000313|EMBL:EJL77631.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_190_curated_21
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20914..22881
DNA (1968bp) protein (656aa)
excinuclease ABC subunit C n=1 Tax=Variovorax paradoxus RepID=UPI00036410B1
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
uvrC; excinuclease ABC subunit C; K03703 excinuclease ABC subunit C
SCNpilot_cont_300_bf_scaffold_190_curated_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22942..23508
DNA (567bp) protein (189aa)
CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5); K00995 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:ACS18434.1}; EC=2.7.8.5 {ECO:0000313|EMBL:ACS18434.1};; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CUK6_VARPS
SCNpilot_cont_300_bf_scaffold_190_curated_23
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23505..24392
DNA (888bp) protein (296aa)
DMT(Drug/metabolite transporter) superfamily permease n=1 Tax=Variovorax sp. CF313 RepID=J3CT18_9BURK
DMT(Drug/metabolite transporter) superfamily permease {ECO:0000313|EMBL:EJL77636.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative transporter, EamA-like family
SCNpilot_cont_300_bf_scaffold_190_curated_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24417..25376)
DNA (960bp) protein (320aa)
Transcriptional regulator, LysR family n=1 Tax=Variovorax paradoxus B4 RepID=T1X9H0_VARPD
transcriptional regulator, LysR family
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AGU48979.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_190_curated_25
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25415..26359
DNA (945bp) protein (315aa)
alpha/beta hydrolase fold protein; K01561 haloacetate dehalogenase [EC:3.8.1.3]
Putative hydrolase or acyltransferase of alpha/beta superfamily n=1 Tax=Variovorax sp. CF313 RepID=J2KXA7_9BURK
Putative hydrolase or acyltransferase of alpha/beta superfamily {ECO:0000313|EMBL:EJL77638.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_190_curated_26
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26356..27441
DNA (1086bp) protein (362aa)
tartrate dehydrogenase (EC:4.1.1.73); K07246 tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
Tartrate dehydrogenase n=1 Tax=Variovorax sp. CF313 RepID=J3CSK0_9BURK
Tartrate dehydrogenase {ECO:0000313|EMBL:EJL77639.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_190_curated_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27662..27934
DNA (273bp) protein (91aa)
Histone family protein DNA-binding protein n=4 Tax=Variovorax RepID=C5CUL1_VARPS
histone family protein DNA-binding protein; K03530 DNA-binding protein HU-beta
Variovorax paradoxus strain MEDvA23 contig_20, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33599.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_300_bf_scaffold_190_curated_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28119..30041
DNA (1923bp) protein (641aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
ppic-type peptidyL-prolyl cis-trans isomerase; K03770 peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
peptidyl-prolyl cis-trans isomerase n=1 Tax=Variovorax paradoxus RepID=UPI00037F4E64
SCNpilot_cont_300_bf_scaffold_190_curated_29
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30149..30823
DNA (675bp) protein (225aa)
Phosphoglycerate mutase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V8V3_VARPE
Variovorax paradoxus strain MEDvA23 contig_20, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33597.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
phosphoglycerate mutase
SCNpilot_cont_300_bf_scaffold_190_curated_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30845..31189)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V8V4_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU36176.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
Displaying items 1-30 of 278 in total

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