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SCNpilot_cont_300_bf_scaffold_190_curated

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Displaying items 31-60 of 278 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_190_curated_31
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31189..31437)
DNA (249bp) protein (83aa)
Transglycosylase-associated protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V8V5_VARPE
transglycosylase-associated protein
Variovorax paradoxus strain MEDvA23 contig_20, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33595.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_300_bf_scaffold_190_curated_32
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31590..32222
DNA (633bp) protein (211aa)
Putative Raf kinase inhibitor-like protein, YbhB/YbcL family n=1 Tax=Variovorax paradoxus B4 RepID=T1X7S1_VARPD
Variovorax paradoxus strain MEDvA23 contig_20, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33727.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
putative Raf kinase inhibitor-like protein, YbhB/YbcL family
SCNpilot_cont_300_bf_scaffold_190_curated_33
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32656..33000
DNA (345bp) protein (115aa)
histidine biosynthesis protein HisIE n=1 Tax=Variovorax paradoxus RepID=UPI00036FBED0
DNA-binding protein H-NS {ECO:0000313|EMBL:EJL77645.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
histone family protein nucleoid-structuring protein h-ns; K03746 DNA-binding protein H-NS
SCNpilot_cont_300_bf_scaffold_190_curated_34
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33088..34074)
DNA (987bp) protein (329aa)
alcohol dehydrogenase zinc-binding domain-containing protein; K00344 NADPH2:quinone reductase [EC:1.6.5.5]
Alcohol dehydrogenase zinc-binding domain protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V9W6_VARPE
Alcohol dehydrogenase zinc-binding domain protein {ECO:0000313|EMBL:ADU36254.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_190_curated_35
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34202..34960
DNA (759bp) protein (253aa)
5'-nucleotidase SurE {ECO:0000256|HAMAP-Rule:MF_00060}; EC=3.1.3.5 {ECO:0000256|HAMAP-Rule:MF_00060};; Nucleoside 5'-monophosphate phosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00060}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
stationary-phase survival protein sure; K03787 5'-nucleotidase [EC:3.1.3.5]
5'-nucleotidase SurE n=1 Tax=Variovorax sp. CF313 RepID=J2TGS1_9BURK
SCNpilot_cont_300_bf_scaffold_190_curated_36
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34962..35735
DNA (774bp) protein (258aa)
protein-L-isoaspartate o-methyltransferase (EC:2.1.1.77); K00573 protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
protein-L-isoaspartate O-methyltransferase n=1 Tax=Variovorax paradoxus RepID=UPI00035C76C0
Variovorax paradoxus strain MEDvA23 contig_20, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33591.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_300_bf_scaffold_190_curated_37
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35747..36658
DNA (912bp) protein (304aa)
lipoprotein NlpD n=1 Tax=Variovorax paradoxus RepID=UPI00036EA20A
Metalloendopeptidase-like membrane protein {ECO:0000313|EMBL:EJL77649.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
peptidase m23; K06194 lipoprotein NlpD
SCNpilot_cont_300_bf_scaffold_190_curated_38
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36663..37709
DNA (1047bp) protein (349aa)
RNA polymerase sigma factor RpoS n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V9X0_VARPE
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
RNA polymerase, sigma 70 family subunit; K03087 RNA polymerase nonessential primary-like sigma factor
SCNpilot_cont_300_bf_scaffold_190_curated_39
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37751..39187
DNA (1437bp) protein (479aa)
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD {ECO:0000256|HAMAP-Rule:MF_01010}; EC=2.1.1.190 {ECO:0000256|HAMAP-Rule:MF_01010};; 23S rRNA(m5U1939)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01010}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
TrmA family RNA methyltransferase; K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Variovorax sp. CF313 RepID=J3CT28_9BURK
SCNpilot_cont_300_bf_scaffold_190_curated_40
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39247..39948)
DNA (702bp) protein (234aa)
FtsH-interacting integral membrane protein n=1 Tax=Variovorax sp. CF313 RepID=J2TGS5_9BURK
FtsH-interacting integral membrane protein {ECO:0000313|EMBL:EJL77652.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein; K06890
SCNpilot_cont_300_bf_scaffold_190_curated_41
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40142..40549
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037E2BDE
Uncharacterized protein {ECO:0000313|EMBL:EJL77653.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_190_curated_42
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40733..40945)
DNA (213bp) protein (71aa)
Hemin uptake protein hemP n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V9X4_VARPE
hemin uptake protein hemp
Hemin uptake protein hemP {ECO:0000313|EMBL:ADU36262.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_190_curated_43
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41040..41453)
DNA (414bp) protein (138aa)
biopolymer transporter ExbD n=1 Tax=Variovorax paradoxus RepID=UPI0003617C96
biopolymer transport protein exbd/tolr; K03559 biopolymer transport protein ExbD
Biopolymer transport protein ExbD/TolR {ECO:0000313|EMBL:ADU36263.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_190_curated_44
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41459..42172)
DNA (714bp) protein (238aa)
ExbB n=1 Tax=Variovorax paradoxus RepID=UPI0003676825
Variovorax paradoxus strain MEDvA23 contig_20, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33583.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
putative MotA/TolQ/ExbB proton channel
SCNpilot_cont_300_bf_scaffold_190_curated_45
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42195..42920)
DNA (726bp) protein (242aa)
TonB family protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VAR1_VARPE
tonb family protein; K03832 periplasmic protein TonB
TonB family protein {ECO:0000313|EMBL:ADU36265.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_190_curated_46
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43385..44065)
DNA (681bp) protein (227aa)
PKHD-type hydroxylase RT97_09290 {ECO:0000256|HAMAP-Rule:MF_00657}; EC=1.14.11.- {ECO:0000256|HAMAP-Rule:MF_00657};; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
2og-fe(ii) oxygenase; K07336 PKHD-type hydroxylase [EC:1.14.11.-]
Fe(II)-dependent oxygenase n=1 Tax=Variovorax paradoxus RepID=UPI0003612AE8
SCNpilot_cont_300_bf_scaffold_190_curated_47
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44147..45514)
DNA (1368bp) protein (456aa)
flavodoxin/nitric oxide synthase; K00380 sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
Flavodoxin/nitric oxide synthase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VAR5_VARPE
Variovorax paradoxus strain MEDvA23 contig_20, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33580.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_300_bf_scaffold_190_curated_48
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45511..46515)
DNA (1005bp) protein (335aa)
thiamine biosynthesis protein ApbE n=1 Tax=Variovorax paradoxus RepID=UPI0003646307
Variovorax paradoxus strain MEDvA23 contig_20, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33579.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
apbe family lipoprotein; K03734 thiamine biosynthesis lipoprotein
SCNpilot_cont_300_bf_scaffold_190_curated_49
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46530..47339)
DNA (810bp) protein (270aa)
ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI0003749A42
nickel transport complex, nikm subunit, transmembrane
Nickel transport complex, NikM subunit, transmembrane {ECO:0000313|EMBL:ADU36271.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_190_curated_50
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47395..47895)
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000368D8E3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU36272.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_190_curated_51
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47961..48605)
DNA (645bp) protein (215aa)
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI00037053A0
Variovorax paradoxus strain MEDvA23 contig_20, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33578.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
pepsy-associated tm helix domain-containing protein; K09939 hypothetical protein
SCNpilot_cont_300_bf_scaffold_190_curated_52
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48726..49202)
DNA (477bp) protein (159aa)
Bacterioferritin n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VAS0_VARPE
Bacterioferritin {ECO:0000256|RuleBase:RU000623}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
bacterioferritin; K03594 bacterioferritin
SCNpilot_cont_300_bf_scaffold_190_curated_53
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

49464..50027
DNA (564bp) protein (188aa)
peroxiredoxin (EC:1.11.1.15); K03386 peroxiredoxin (alkyl hydroperoxide reductase subunit C) [EC:1.11.1.15]
Peroxiredoxin {ECO:0000313|EMBL:ACS18463.1}; EC=1.11.1.15 {ECO:0000313|EMBL:ACS18463.1};; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
Peroxiredoxin n=2 Tax=Variovorax RepID=C5CUN5_VARPS
SCNpilot_cont_300_bf_scaffold_190_curated_54
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50117..51673
DNA (1557bp) protein (519aa)
alkyl hydroperoxide reductase subunit F; K03387 alkyl hydroperoxide reductase subunit F [EC:1.6.4.-]
NADH dehydrogenase n=1 Tax=Variovorax paradoxus RepID=UPI000379AF67
Alkyl hydroperoxide reductase, F subunit {ECO:0000313|EMBL:ACS18464.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_190_curated_55
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51833..54046
DNA (2214bp) protein (738aa)
TonB-dependent hemoglobin/transferrin/lactoferrin family receptor n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VAS3_VARPE
Variovorax paradoxus strain MEDvA23 contig_30, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31799.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
tonb-dependent hemoglobin/transferrin/lactoferrin family receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_cont_300_bf_scaffold_190_curated_56
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54084..55184
DNA (1101bp) protein (367aa)
Hemin-degrading family protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VAS4_VARPE
Variovorax paradoxus strain MEDvA23 contig_30, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31798.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hemin-degrading family protein; K07225 putative hemin transport protein
SCNpilot_cont_300_bf_scaffold_190_curated_57
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55181..56080
DNA (900bp) protein (300aa)
Periplasmic binding protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VAS6_VARPE
Variovorax paradoxus strain MEDvA23 contig_30, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31796.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_190_curated_58
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

56077..57111
DNA (1035bp) protein (345aa)
Transport system permease protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VAS7_VARPE
transport system permease; K02015 iron complex transport system permease protein
Transport system permease protein {ECO:0000313|EMBL:ADU36281.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_190_curated_59
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

57108..57914
DNA (807bp) protein (269aa)
ABC transporter; K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34]
ABC transporter related protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VAS8_VARPE
ABC transporter related protein {ECO:0000313|EMBL:ADU36282.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_190_curated_60
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(57964..58791)
DNA (828bp) protein (276aa)
Putative phosphoenolpyruvate synthase regulatory protein {ECO:0000256|HAMAP-Rule:MF_01062, ECO:0000256|SAAS:SAAS00213394}; Short=PEP synthase regulatory protein {ECO:0000256|HAMAP-Rule:MF_01062};; Short=PSRP {ECO:0000256|HAMAP-Rule:MF_01062};; EC=2.7.11.33 {ECO:0000256|HAMAP-Rule:MF_01062, ECO:0000256|SAAS:SAAS00160002};; EC=2.7.4.28 {ECO:0000256|HAMAP-Rule:MF_01062, ECO:0000256|SAAS:SAAS00159999};; Pyruvate, water dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_01062}; TaxID=34073 species="Bacteria;
PEP synthetase regulatory protein n=1 Tax=Variovorax paradoxus RepID=UPI00035FACB9
hypothetical protein; K09773 hypothetical protein
Displaying items 31-60 of 278 in total

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