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SCNpilot_cont_300_bf_scaffold_190_curated_48

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(45511..46515)

Top 3 Functional Annotations

Value Algorithm Source
thiamine biosynthesis protein ApbE n=1 Tax=Variovorax paradoxus RepID=UPI0003646307 similarity UNIREF
DB: UNIREF100
  • Identity: 77.0
  • Coverage: 330.0
  • Bit_score: 534
  • Evalue 1.10e-148
Variovorax paradoxus strain MEDvA23 contig_20, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33579.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 74.6
  • Coverage: 334.0
  • Bit_score: 508
  • Evalue 8.80e-141
apbe family lipoprotein; K03734 thiamine biosynthesis lipoprotein similarity KEGG
DB: KEGG
  • Identity: 72.5
  • Coverage: 334.0
  • Bit_score: 495
  • Evalue 1.30e-137

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1005
TTGGGCCTTTCGTTCAGCACCTGGCGCGCCGGTGGCTACGCCAACGCGGCCGTCCCTCGCCCCGCCGATCCCGCCAGCCTTCAGCAGTTGGCCGGCCAGACGATGGGCACCACCTGGTCGCTGCGTTTCGACAACCCTCGGATGCTGCCGCTGACGCTGGTGCGCGAGGCTGTCGAGGGGGCGCTGGGTACGGTGGTCGCGCAGATGAGCCATTGGGAGCAGGACTCGGACATCAGCCGGATCAACAGCGCCCCCGCCGGGTCGCGCCATGTGCTGCCGAAAGAATTCGGCGAGGTGATGCGCTGCGCCGCGTCATGGGCAGCCGCCAGTGGCGGTGCGATCGATCCGACGGTGGGCTCTCTGGTCGCTTGCTGGGGCTTCGGCCCCGAGGCCAATGAAGCCGGCTTGCCTGCGGCTCAGGCGCTCGCCGAAGCCCGTTCGCAGGTCGGCTGGCATCGGCTGGCTTTCGATGCGGCCGATGTTTCGCTGACGCAGCCAGGCAGTGTTGCGCTCGATCTTTCCGGCATCGCCAAGGGCTTCGCGGTCGACCATGGTACGGAGACGCTGCAGGCGCTGGGGCTGGCCGACTTCCTGTTCGAAATCGGCGGTGAGCTGCGGGGCGTCGGACGGCGTCCGGGCGGACAGCCGTGGCAGGTGCAGGTCGACAGCGGCCTGGCCGCCGCGCAACGCATCGCGCTGGCGGACATGGCCGTCGCGACCTCCGGCGACCGCTGGCACCAACGGGCGCATGAAGGCAAGCGCTGGTCGCACACCATCGACCCGCGCACCGGCGAGCCCGTCGCCCATGCGTTGGCGAGCGTGACCGTGGTGCACCCGCGATGCATGCAAGCCGACGCGCTGGCCACCGTGCTGACGGTGCTGGGCCCCGACGAGGGCCAGGATTTTGCCGAACGGCACGGTGTCGCTGCGTTGTTCGTGAGTCATGGCGATCCGTCACCTGCCGTGCGAGCCACGAGCAACTGGCCTGCGCAAGTCCGGGCATGA
PROTEIN sequence
Length: 335
LGLSFSTWRAGGYANAAVPRPADPASLQQLAGQTMGTTWSLRFDNPRMLPLTLVREAVEGALGTVVAQMSHWEQDSDISRINSAPAGSRHVLPKEFGEVMRCAASWAAASGGAIDPTVGSLVACWGFGPEANEAGLPAAQALAEARSQVGWHRLAFDAADVSLTQPGSVALDLSGIAKGFAVDHGTETLQALGLADFLFEIGGELRGVGRRPGGQPWQVQVDSGLAAAQRIALADMAVATSGDRWHQRAHEGKRWSHTIDPRTGEPVAHALASVTVVHPRCMQADALATVLTVLGPDEGQDFAERHGVAALFVSHGDPSPAVRATSNWPAQVRA*