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SCNpilot_cont_300_bf_scaffold_190_curated_49

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(46530..47339)

Top 3 Functional Annotations

Value Algorithm Source
ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI0003749A42 similarity UNIREF
DB: UNIREF100
  • Identity: 92.6
  • Coverage: 269.0
  • Bit_score: 492
  • Evalue 2.20e-136
nickel transport complex, nikm subunit, transmembrane similarity KEGG
DB: KEGG
  • Identity: 89.6
  • Coverage: 269.0
  • Bit_score: 477
  • Evalue 3.90e-132
Nickel transport complex, NikM subunit, transmembrane {ECO:0000313|EMBL:ADU36271.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 89.6
  • Coverage: 269.0
  • Bit_score: 477
  • Evalue 1.80e-131

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 810
ATGACCCATCTCAACCTGCGCGCCGCCGGCCTCGCCATCGCCCTCACCGCCATCGCTTCGCTGGCCCAGGCGCACAACGCCTGGCTGCTGCCCTCGTCCACCGTGTTCTCCAAGGCGGACACCGTTTCGGTCGACGCCGCCGTGTCGAACGACCTGTTCGTCGCCAACCACGCGCCGCTGCGCCTGGACGGCCTGCAGATCACCGCGCCCGACGGCAGCACCGTCAAGCCCGAGGCCGAAGCCAAGCTCAAGCTGCGCAACGTATTCGATGTGAACGTGGCGCAGACCGGCACTTACCGCATCGCGGTGATCAACGCCGGCGCGTTCGCAAGCTGGAAAGACAAGGCCACGGGCCAGACCAAGCGCGCACGCGGCACGGCCGAGAGCATCGCCAAGGAAGTGCCCGCCGATGCGACGGACGTGACCATCACGCAGTCGTCCGGCCGCATCGAGACCTTCGTGACCGTCGGCAAGCCCTCGGCGCTCAAGCCGGTCGGCCAGGGTCTGGAACTGATCGCCGCGGGCAGCCCGACCGATCTGGCCAAGGGCGAGAAAGCCACGTTCACGCTCAACCTGGACGGCCAGCCCGCGAAGGGCCTCGAAGTGACGGTGACGGCAGGCAACACGCAATACCGCGACAAGCTCGAGGAACTCAAGCTGAAGACCGACGACAAGGGCCAGTTCAGCGTGACCTGGCCGGCCGCCGGCATGTACTGGCTCGACGCCAGCACCAAGGACAGCAAGACCACGGTGCCGCAAGCCAAGGAGCGCCGCCTGAGCTACGCGGCCACCCTCGAAGTGATGCCCTGA
PROTEIN sequence
Length: 270
MTHLNLRAAGLAIALTAIASLAQAHNAWLLPSSTVFSKADTVSVDAAVSNDLFVANHAPLRLDGLQITAPDGSTVKPEAEAKLKLRNVFDVNVAQTGTYRIAVINAGAFASWKDKATGQTKRARGTAESIAKEVPADATDVTITQSSGRIETFVTVGKPSALKPVGQGLELIAAGSPTDLAKGEKATFTLNLDGQPAKGLEVTVTAGNTQYRDKLEELKLKTDDKGQFSVTWPAAGMYWLDASTKDSKTTVPQAKERRLSYAATLEVMP*