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SCNpilot_cont_300_bf_scaffold_190_curated_39

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 37751..39187

Top 3 Functional Annotations

Value Algorithm Source
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD {ECO:0000256|HAMAP-Rule:MF_01010}; EC=2.1.1.190 {ECO:0000256|HAMAP-Rule:MF_01010};; 23S rRNA(m5U1939)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01010}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.4
  • Coverage: 482.0
  • Bit_score: 930
  • Evalue 1.30e-267
TrmA family RNA methyltransferase; K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] similarity KEGG
DB: KEGG
  • Identity: 94.8
  • Coverage: 478.0
  • Bit_score: 929
  • Evalue 5.10e-268
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Variovorax sp. CF313 RepID=J3CT28_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 94.4
  • Coverage: 482.0
  • Bit_score: 930
  • Evalue 9.60e-268

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Taxonomy

Variovorax sp. CF313 → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1437
ATGACGGAATCCATCGAAGAAAAGAAAGTCCCCACGAATCCCGGCGAAGAATGGCTGCAGGTCGAGTCCCTCGACCTCGACGCACAGGGCGTATCGCACAAGGCTGACGGCATGGTCGTGTTCATCGAGGGCGCATTGCCTTTCGAGGAAGTGCAGTTCAACGTCCACCGCCGGAAGAACAACTGGGAGCAGGGCACGGTCACGGCCATTCGCCGCGAATCATCACAGCGCGTGCGCCCGGGCTGCCCGCATTTCGGCCTGCACACGGGTGCCTGCGGTGGCTGCAAGATGCAGCACCTGGACGCGGCGGCCCAGGTGGCCGTGAAGCAGCGTGCGCTGGAAGACAACCTGTGGCACCTCGGCAAGGTCAAGCCCGAGAACCTGCTGCGGCCGCTCGAAGGCCCGGCGTGGCACTACCGCTATCGCGCGCGGCTGTCGGTGCGGCACGTGGTCAAGAAGGGCACGGTGCTGATCGGCTTTCACGAGCGCAAGAGCCGCTACCTGGCCGACATGCAGGTGTGCCCGGTGCTGCCGAAGCAGGTCAGCGAAATGCTGATGCCGCTGCGCGCGCTGATCGGCTCGCTGGACGCGCGCGACACCTGCCCTCAGATCGAACTGGCTTGCGGCGATGCACCGGACTCCACGAAGCTCGGCACGATCGCACTGGTGCTGCGGCACCTGGAGCCGCTGTCGCGCGCCGACATCGACCGCCTGAAGGCCTTTGCGGCGGAAAACGAGGGCGTGCAATGGTGGCTGCAGGCCAAGGGGCCTGACACGGTCAAGCTGCTCGAAGAAGGCGGCTCGCCGTTGTCCTACCGGCTGCCGGAATTCGGCGTCACGATGCCCTTCAAGCCGACCGACTTCACGCAGGTCAATCCGCACATCAACCGCGCGCTCGTGGGCAAGGCGTTGCGCCTGCTCGACGTGCAGCCCGATGAGCGCGTGATCGACTGGTTCTGCGGCCTCGGCAACTTCACGCTGCCGCTGGCGAGCCAGGCGCGCGAGGTGCTGGGCATCGAGGGCAGCGACACGCTGGTGGCACGCGCCACGGCCAACTACGGGACGAACCAGCCCGCGACCTCCGCGCGCCGCGAGTTGTCGCCTGCGAAGTTTGTCGCGCGCAACCTGTTCGAGATGACGCCGGCCATGCTGGTGGAGGACGGCAGCGCGGACAAATGGCTGGTCGACCCGCCGCGCGAAGGCGCGTTCGCGCTTGCGAAGGCCATGGCCGACCTGCATCAGCAGCCCGAACTGTGCACCGATGGCTGGACGCCGCCGAAACGCATCGTGTACGTGAGCTGCAATCCGTCGACGCTGGCGCGCGATGCCGGGCTGCTGGTGCATCAGGCGGGCTACCGCTGCACCTTTGCGGGGGTGGTCAACATGTTCCCGCACACTGCGCACGTCGAGTCGATTGCGGTGTTCGAGCTGGAATGA
PROTEIN sequence
Length: 479
MTESIEEKKVPTNPGEEWLQVESLDLDAQGVSHKADGMVVFIEGALPFEEVQFNVHRRKNNWEQGTVTAIRRESSQRVRPGCPHFGLHTGACGGCKMQHLDAAAQVAVKQRALEDNLWHLGKVKPENLLRPLEGPAWHYRYRARLSVRHVVKKGTVLIGFHERKSRYLADMQVCPVLPKQVSEMLMPLRALIGSLDARDTCPQIELACGDAPDSTKLGTIALVLRHLEPLSRADIDRLKAFAAENEGVQWWLQAKGPDTVKLLEEGGSPLSYRLPEFGVTMPFKPTDFTQVNPHINRALVGKALRLLDVQPDERVIDWFCGLGNFTLPLASQAREVLGIEGSDTLVARATANYGTNQPATSARRELSPAKFVARNLFEMTPAMLVEDGSADKWLVDPPREGAFALAKAMADLHQQPELCTDGWTPPKRIVYVSCNPSTLARDAGLLVHQAGYRCTFAGVVNMFPHTAHVESIAVFELE*